hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg06775/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0580 ( 945 res) mbg06775 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- RhoGAP RhoGAP domain 188.7 9.5e-53 1 PH PH domain 100.0 4.6e-26 3 RA Ras association (RalGDS/AF-6) domain 31.4 2.1e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PH 1/3 133 243 .. 1 92 [] 27.4 0.00033 PH 2/3 255 352 .. 1 92 [] 18.4 0.17 RhoGAP 1/1 369 522 .. 1 155 [] 188.7 9.5e-53 RA 1/1 566 660 .. 1 98 [] 31.4 2.1e-05 PH 3/3 671 773 .. 1 92 [] 58.6 1.3e-13 Alignments of top-scoring domains: PH: domain 1 of 3, from 133 to 243: score 27.4, E = 0.00033 *->vikeGwLlkkg...........gkkswkkRyfvLfndvLlyykdkk. + +L++ ++ +++++ ++ k ++vL ++ L+yy+++ mKIAA0580 133 SFLCDFLYQTAaaasrvssekkLLEDTNKKWCVLEGGFLSYYENDRc 179 kkpkgsipLsgiqvekvpdn......krkncFeirt.dretlllqaesee +p g+i++s++ + v + + +++ ++Fei ++++++l+ ae+++ mKIAA0580 180 TTPNGTINISEVICLAVHKEdfylntGPIFVFEIYLpSERVFLFGAETSQ 229 erkeWvkaiqsair<-* ++W + i + mKIAA0580 230 IQRKWTETIAKRFV 243 PH: domain 2 of 3, from 255 to 352: score 18.4, E = 0.17 *->vikeGwLlkkg..gkkswkkRyfvLfndvLlyykdkk...kkpkgsi G L+ k+ +++ +w+k +f ++L+++ ++ +++ mKIAA0580 255 YDLIGQLFYKDchALDQWRKGWFAMDKSSLCFCLQTQeaqEERMNLR 301 pLsgiqvekvpdn.krkncFeirt.dretlllqaeseeerkeWvkaiqsa L+++++ + + n+++ ++ ++ ++r tl+++ + + + W +ai++a mKIAA0580 302 RLQELTISTMVQNgEKVDVLLLVEkGR-TLYIHGHTKLDFTVWHTAIEKA 350 ir<-* + mKIAA0580 351 AG 352 RhoGAP: domain 1 of 1, from 369 to 522: score 188.7, E = 9.5e-53 *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln P+iv +Ci+f+ ++GL ++ Iy++ G+ +i eL e f ++++ +++ mKIAA0580 369 PIIVNSCIAFVTQYGLGCKYIYQKDGDPLHISELLESFKKDARSVKL 415 dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea + + +v+++LK FL ++ + Llt+ely+ ++ a++++de er ++ mKIAA0580 416 RAGKHQLEDVTGVLKSFLSDIDDALLTKELYPYWVS-ALDTQDEKERTSK 464 lrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLlr +r+ +r+LP +Nr+tL++L++hL+rV+++se+N+M+ahNLA+vF+ +L++ mKIAA0580 465 YRAFIRSLPGVNRATLAALIEHLYRVQKCSEINHMNAHNLAMVFSSCLFQ 514 ppdgdsad<-* ++ +s + mKIAA0580 515 TKGQTSEE 522 RA: domain 1 of 1, from 566 to 660: score 31.4, E = 2.1e-05 *->dsgvlrVygedgtpgtyktilvskntTaeeViralLrKfgldaddpe ++ + V+ e p+++ i++s+ + aee+ + +L ++ + ++ mKIAA0580 566 GDLLIEVFVERKEPDCSIIIRISPVMEAEELTNDILAIKNI-IPMKG 611 d.yvLvEvslvlerggeerrvLpddEkPlqiqlqlkrdaqv.rsrFlLrr d ++ +E v+e ++ er +L+ +E++l+ +lq+++ a++++ ++++r mKIAA0580 612 DiWATFE---VIENEELER-PLHYTENVLEQVLQWSSLAEPgSAYLVVKR 657 red<-* mKIAA0580 658 FLT 660 PH: domain 3 of 3, from 671 to 773: score 58.6, E = 1.3e-13 *->vikeGwLlkkg......gkkswkkRyfvLfndvLlyykdkk.kkpkg ikeG L++k+++++ ++ ++++R +vL+++ L++ykd+k++k+ + mKIAA0580 671 SIKEGILKLKEepskilSGNKFQDRCVVLRDGHLFIYKDPKsSKHDK 717 sipLsgiqvekvpdn..krkncFeirt.dr.etlllqaeseeerkeWvka ++pL+ ++++ ++ + k + ++ ++ +++ +++l+++s + eW+++ mKIAA0580 718 MFPLRAMKFYLGVKKkmKPPTSWGLTVySEkHHWHLCCDSLQAQMEWMAS 767 iqsair<-* i a++ mKIAA0580 768 IFIAQH 773 //