hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg00030/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0578 ( 1553 res) mbg00030 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- LamG Laminin G domain 696.4 8.2e-205 6 EGF Epidermal growth factor-like domain. 38.5 8.8e-07 3 4.1m putative band 4.1 homologues' binding motif 37.3 2e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- LamG 1/6 96 238 .. 1 137 [] 119.4 4.1e-31 EGF 1/3 262 302 .. 1 32 [] 15.9 5.7 LamG 2/6 350 492 .. 1 137 [] 123.5 2.3e-32 LamG 3/6 546 698 .. 1 137 [] 159.0 4.9e-43 EGF 2/3 725 759 .. 1 32 [] 27.3 0.0021 LamG 4/6 784 923 .. 1 137 [] 97.8 1.3e-24 LamG 5/6 971 1107 .. 1 137 [] 130.8 1.5e-34 EGF 3/3 1132 1166 .. 1 32 [] 11.4 25 LamG 6/6 1194 1351 .. 1 137 [] 81.0 1.4e-19 4.1m 1/1 1498 1516 .. 1 19 [] 37.3 2e-06 Alignments of top-scoring domains: LamG: domain 1 of 6, from 96 to 238: score 119.4, E = 4.1e-31 *->t.lsisfsFrTtspnGlLlyag...ggdflaleLvlEDsdgdGrlvl +++ sf+++T+s++Gl ly ++++ +dfl+l L ++Grl+l mKIAA0578 96 CeSEMSFQLKTRSARGLVLYFDdegFCDFLELILT-----RGGRLQL 137 rydlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDg.. +++ + ++pa+l +d tp+nDG WH+V+++r+ r+ tL++D + mKIAA0578 138 SFSIFC---AEPATLLAD----TPVNDGAWHSVRIRRQFRNTTLYIDRae 180 gnpvsges..t.LdldkeesgplylGGlPe.............lpvspgF +v+ +s+++++ + + l++GGlP++ + + + ++ +++F mKIAA0578 181 AKWVEVKSkrRdMTVF----SGLFVGGLPPelraaalkltlasVREREPF 226 rGCirnlrvngk<-* +G ir++rvn+ mKIAA0578 227 KGWIRDVRVNSS 238 EGF: domain 1 of 3, from 262 to 302: score 15.9, E = 5.7 *->eCa........pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe< +C+ +++++++ C nG G+C ++ C+C G++g+ C mKIAA0578 262 PCEageegeggVCLNG-----GVCSvvddQAVCdCSRTGFRGkDCS 302 -* mKIAA0578 - - LamG: domain 2 of 6, from 350 to 492: score 123.5, E = 2.3e-32 *->t.lsisfsFrTtspnGlLlyag.ggdflaleLvlEDsdgdGrlvlry ++ +i++sF+T + nGl+l++g+ d++ l+L+ +G + l++ mKIAA0578 350 SsDEITLSFKTLQRNGLMLHTGkSADYVNLALK------NGAVSLVI 390 dlGssttggparltsdsdrptplnDGqWHrVsvern........grsvtL +lGs g+++ ++++ + ++nD+ WH+V+v+rn +++++ + vt+ mKIAA0578 391 NLGS----GAFEALVEPV-NGKFNDNAWHDVKVTRNlrqhsgigHAMVTI 435 sVDggnpvsges....t.LdldkeesgplylGGlPe......lpvspgFr sVDg ++++g+++++ t L +d + +y+GG P++ + +++pvs++F mKIAA0578 436 SVDGILTTTGYTqedyTmLGSD----DFFYVGGSPStadlpgSPVSNNFM 481 GCirnlrvngk<-* GC++++++ ++ mKIAA0578 482 GCLKEVVYKNN 492 LamG: domain 3 of 6, from 546 to 698: score 159.0, E = 4.9e-43 *->t.lsisfsFrTtspnGlLlyag...............ggdflaleLv +++sisf+FrTt+pnGl+l+++++++++++ ++++ + df+a+e+ mKIAA0578 546 KtGSISFDFRTTEPNGLILFSHgkprhqkdakhpqmiKVDFFAIEML 592 lEDsdgdGrlvlrydlGssttggparltsdsdrptplnDGqWHrVsvern dG+l+l +d+Gs g++++ + + +++nDG+W++V ++r+ mKIAA0578 593 ------DGHLYLLLDMGS----GTIKIKALQ---KKVNDGEWYHVDFQRD 629 grsvtLsVDggnpvsges....t.LdldkeesgplylGGlPe........ grs+t+sV+ ++++ +++++++ Ldld + lylGGlPe++ + + mKIAA0578 630 GRSGTISVN-TLRTPYTApgesEiLDLD----DELYLGGLPEnkaglvfp 674 .....lpvspgFrGCirnlrvngk<-* ++ + + + g++GCir+l+++g+ mKIAA0578 675 tevwtALLNYGYVGCIRDLFIDGQ 698 EGF: domain 2 of 3, from 725 to 759: score 27.3, E = 0.0021 *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-* +C+++pC n+ G C+++ + y C+C g Gy g++Ce mKIAA0578 725 PCLsnPCKNN-----GMCRdgwnRYVCdCSGTGYLGrSCE 759 LamG: domain 4 of 6, from 784 to 923: score 97.8, E = 1.3e-24 *->t.lsisfsFrTtspnGlLlyag...ggdflaleLvlEDsdgdGrlvl +++s++Fr + + G+L+ +++++ d l leL Gr++l mKIAA0578 784 EaEDVSLRFRSQRAYGILMATTsrdSADTLRLELD------AGRVKL 824 rydlGsst.....tggparltsdsdrptplnDGqWHrVsverngrsvtLs +++l++++ + ++++gp +l ++ + lnD++WH+V+v+r g+s+ L+ mKIAA0578 825 TVNLDCIRincnsSKGPETLFAG----YNLNDNEWHTVRVVRRGKSLKLT 870 VDggnpvsges....t.LdldkeesgplylGGlPe....lpvspgFrGCi VD++ ++g +++t+L+++ ++ G + e++ + v ++F G + mKIAA0578 871 VDDQQAMTGQMagdhTrLEFH-----NIETGIITErrylSSVPSNFIGHL 915 rnlrvngk<-* ++l++ng+ mKIAA0578 916 QSLTFNGM 923 LamG: domain 5 of 6, from 971 to 1107: score 130.8, E = 1.5e-34 *->t.lsisfsFrTtspnGlLlyag..ggdflaleLvlEDsdgdGrlvlr t++++ f+F+Tts +Gl+ly++++g+df+ +eLv G+l+++ mKIAA0578 971 TsMHLFFQFKTTSLDGLILYNSgdGNDFIVVELV------KGYLHYV 1011 ydlGssttggparltsdsdrptplnDGqWHrVsvern.grsvtLsVDggn +dlG+ g+ + +s ++plnD+qWH V ++r++ + t+++D + mKIAA0578 1012 FDLGN----GANLIKGSS--NKPLNDNQWHNVMISRDtSNLHTVKIDTKI 1055 pvsges..t.LdldkeesgplylGGlPe.........lpvspgFrGCirn +++ +++ ++Ldl+ ++ly+GG+ ++ ++ ++ + +gF+GC+ + mKIAA0578 1056 TTQITAgaRnLDLK----SDLYIGGVAKetykslpklVHAKEGFQGCLAS 1101 lrvngk<-* + +ng+ mKIAA0578 1102 VDLNGR 1107 EGF: domain 3 of 3, from 1132 to 1166: score 11.4, E = 25 *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-* C+++ Csn G+C+ ++++C+C ++g+ C mKIAA0578 1132 TCQedSCSNQ-----GVCLqqwdGFSCdCSMTSFSGpLCN 1166 LamG: domain 6 of 6, from 1194 to 1351: score 81.0, E = 1.4e-19 *->t.lsisfsFrTtspnGlLlyag....ggdflaleLvlEDsdgdGrlv + ++ + F T +++++L+ ++++++ gd+l+l+++ +G++ mKIAA0578 1194 RaDRLAIGFSTVQKEAVLVRVDsssgLGDYLELHIH------QGKIG 1234 lrydlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDgg + ++ G ++ a+ +s+ +nDG++H V+++r+g+++tL+VD + mKIAA0578 1235 VKFNVGT---DDIAIEESN----AIINDGKYHVVRFTRSGGNATLQVD-S 1276 npvsges....................................t.Ldldk pv ++ + +++++++ +++ + + ++ ++ +++++ t ++++ mKIAA0578 1277 WPVIERYpagnndnerlaiarqripyrlgrvvdewlldkgrqlTiFNSQ- 1325 eesgplylGGlPelpvspgFrGCirnlrvngk<-* + + +GG ++F+G +++l++ng mKIAA0578 1326 ---ATIIIGGKE---QGQPFQGQLSGLYYNGL 1351 4.1m: domain 1 of 1, from 1498 to 1516: score 37.3, E = 2e-06 *->myrykkRdkGSYhtnEakg<-* my+y++Rd+GSYh++E+++ mKIAA0578 1498 MYKYRNRDEGSYHVDESRN 1516 [output cut off at A = 10 top alignments] //