hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg07362a/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0577  ( 1048 res)   mbg07362a

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DEXDc    DEAD-like helicases superfamily, catalytic d   124.0    1.6e-32   1
HELICc   helicase superfamily c-terminal domain          66.4    3.7e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DEXDc      1/1     432   621 ..     1   219 []   124.0  1.6e-32
HELICc     1/1     640   737 ..     1    86 []    66.4  3.7e-15

Alignments of top-scoring domains:
DEXDc: domain 1 of 1, from 432 to 621: score 124.0, E = 1.6e-32
                   *->gf.klrpyQkeaipwllegrdvilaapTGsGKTlafllpllellkkg
                         + +p  +e + ++ +++++i+ ++TGsGKT++++++l+e ++ +
   mKIAA0577   432    RSlPVFPFREELLAAIANHQVLIIEGETGSGKTTQIPQYLFEEGYTK 478  

                   kplaskkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfvevlkvvgl
                           kg ++ +++P+r++a+ +a ++++++          ++++g 
   mKIAA0577   479 --------KGMKIACTQPRRVAAMSVAARVAREM----------GVKLGN 510  

                   ygG.sktkekeqlrklksgktdilvtTpgrLldll.ngkglsl.nldlvi
                     G s+     ++++++s++t + ++T g+Ll+++ +++  +l  +++v+
   mKIAA0577   511 EVGySI-----RFEDCTSERTVLRYMTDGMLLREFlSEP--DLaSYSVVM 553  

                   lDEaHrlldmgsggdhgfgdqle.llkrl...pknrqrlllSATppeien
                   +DEaH++          ++d+l +l+k + + ++ +++l+ SAT+ +  +
   mKIAA0577   554 VDEAHERT--------LHTDILFgLIKDVarfRPELKVLVASATL-DTAR 594  

                   llklflnlpelfpnpvfisvgf...tlepieqf<-*
                   +++ f        +pvf ++g+++ ++ +i +f   
   mKIAA0577   595 FSAFFDD------APVFRIPGRrtqPPGDILVF    621  

HELICc: domain 1 of 1, from 640 to 737: score 66.4, E = 3.7e-15
                   *->delaelLkellkdpgikvarlHGglsqeeReeilekFrkgkikvLva
                      ++l  +++ell      v++++++l+++++ +i++  + g +kv+va
   mKIAA0577   640    RRLGSKIRELL------VLPIYANLPSDMQARIFQPTPPGARKVVVA 680  

                   TdvaerGlDipgvdlVInydl..................pwspasyiQRi
                   T++ae++l+i g+ +V + ++ ++++ +++++ ++ + +p s+as+ QR+
   mKIAA0577   681 TNIAETSLTIEGIIYVLDPGFckqksynprtgmesltvtPCSKASANQRA 730  

                   GRaGRaG<-*
                   GRaGR     
   mKIAA0577   731 GRAGRVA    737  

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