hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg07362a/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0577  ( 1048 res)   mbg07362a

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
DUF1605    Domain of unknown function (DUF1605)         119.8    5.3e-32   1
HA2        Helicase associated domain (HA2)              90.4    3.7e-23   1
Helicase_C Helicase conserved C-terminal domain          50.6    3.5e-11   1
DEAD       DEAD/DEAH box helicase                        29.8    7.4e-07   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
DEAD         1/1     436   598 ..     1   266 []    29.8  7.4e-07
Helicase_C   1/1     643   737 ..     1    76 []    50.6  3.5e-11
HA2          1/1     798   889 ..     1   124 []    90.4  3.7e-23
DUF1605      1/1     923  1022 ..     1   140 []   119.8  5.3e-32

Alignments of top-scoring domains:
DEAD: domain 1 of 1, from 436 to 598: score 29.8, E = 7.4e-07
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   *->ptpiQaeaipaileneGfalredvlssggmdrlvlqApTGSGKTlaf
                       +p  +e + ai +      +  vl        ++ ++TGSGKT+  
   mKIAA0577   436    VFPFREELLAAIAN------H-QVL--------IIEGETGSGKTTQI 467  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   llPilygqrllkgpksarggksqgggknergfkidspqalvlaPTreLae
                      ++  +    ++                       ++ +  P+r  a+
   mKIAA0577   468 PQYLF--EEGYTKKG---------------------MKIACTQPRRVAAM 494  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   QiyeelkkllkilalsplgvnellrrigtglrvavlslyGGsslkdqldk
                    ++ ++ +                   ++g+++++               
   mKIAA0577   495 SVAARVAR-------------------EMGVKLGNE------------VG 513  

                RF x xxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxx
                   l.rgkres.kggpdIvvgTPgrLldllrngrinikievssertgkl.klk
                   ++ ++++++++++ + ++T g+Ll+ +                 + ++l 
   mKIAA0577   514 YsIRFEDCtSERTVLRYMTDGMLLREF----------------LSEpDLA 547  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   nlkhlkllVlDEahrlldmghgFgedleeilrrlprneplraqllgtilH
                   +    + + +DEah+    ++     +++++r +p+   l+         
   mKIAA0577   548 SY---SVVMVDEAHERTLHTDILFGLIKDVARFRPE---LK--------- 582  

                RF xxxxxxxxxxxxxxxxxxxxxx   
                   qkpniQtllfSATlpprevedl<-*
                         +l+ SATl+++    +   
   mKIAA0577   583 ------VLVASATLDTARFSAF    598  

Helicase_C: domain 1 of 1, from 643 to 737: score 50.6, E = 3.5e-11
                   *->ll.epgikvarlhGglsqeeReeilekFrsgkskvLvaTdvaarGlD
                        + +++ v++++++l+++ + +i++    g +kv+vaT++a+++l+
   mKIAA0577   643    GSkIRELLVLPIYANLPSDMQARIFQPTPPGARKVVVATNIAETSLT 689  

                   ipdvnlVInydl..................pwnpesyiQRiGRaGRaG<-
                   i ++ +V + ++ ++++ +++++ ++ + +p +++s  QR+GRaGR    
   mKIAA0577   690 IEGIIYVLDPGFckqksynprtgmesltvtPCSKASANQRAGRAGRVA   737  

                   *
                    
   mKIAA0577     -   -    

HA2: domain 1 of 1, from 798 to 889: score 90.4, E = 3.7e-23
                   *->aAlelLyeLgAlrDsdgeLTsplGrlmarlPldPrLgkmLvllaalf
                       Ale Ly+LgAl ++ geLT   Gr+ma+lP+dP L+km+ l++ ++
   mKIAA0577   798    LALEQLYALGAL-NHLGELT-TSGRKMAELPVDPMLSKMI-LASEKY 841  

                   gcldealiiaaiLsvrgspfvntGvDRdaqrlpldksekakrWNiSrdla
                    c++e+l++aa+Lsv +s+f++          p dk   a+      +++
   mKIAA0577   842 SCSEEILTVAAMLSVNNSIFYR----------PKDKVVHAD------NAR 875  

                   rakfegrsleksarsrlts.lsDhlall<-*
                    + f               + +Dhl+ll   
   mKIAA0577   876 VNFF--------------LpGGDHLVLL    889  

DUF1605: domain 1 of 1, from 923 to 1022: score 119.8, E = 5.3e-32
                   *->kQLlrilkrlglplnsssgdiellrkailaGlypNvArresdrggkg
                       QL+++l+r ++ l s+ gd+  +rk+i++G++++ Ar++++     
   mKIAA0577   923    EQLEGLLERVEVGLTSCQGDYVRVRKSITSGYFYHTARLTRS----- 964  

                   sYktlr.svrlpvrkkanisdvkdgeekgfktndgnVsiHPsSvLfntkk
                    Y+t++++++                          V+iHP+S+Lf   +
   mKIAA0577   965 GYRTVKqQQT--------------------------VFIHPNSSLF---E 985  

                   kppkwvvytelvetskkgdgskvYardvtaispewllllapgki<-*
                   ++p+w++y+elv t+k      +++r+v +i++ wll++ap ++   
   mKIAA0577   986 QQPRWLLYHELVLTTK------EFMRQVLEIESSWLLEVAP-HY    1022 

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