hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg08792/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0572  ( 1992 res)   mbg08792

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SAC3_GANP SAC3/GANP/Nin1/mts3/eIF-3 p25 family          347.7   1.2e-100   1
RRM_1     RNA recognition motif. (a.k.a. RRM, RBD, or     0.9       0.17   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
RRM_1       1/1     452   514 ..     1    74 []     0.9     0.17
SAC3_GANP   1/1     698   924 ..     1   249 []   347.7 1.2e-100

Alignments of top-scoring domains:
RRM_1: domain 1 of 1, from 452 to 514: score 0.9, E = 0.17
                   *->lfVgNLppdtteedLkd.lFskfGpiesikivrDttretgrskGfaF
                      + ++N+p +++++ + +++Fsk+ ++ ++   r        sk  a 
   mKIAA0572   452    IQCKNIPDYLNDRAILEkHFSKIAKVQRVFTRR--------SKKLAV 490  

                   VeFedeedAekAldalnGkelggrelrv<-*
                   + F d+ +A+ A +    k  g ++  v   
   mKIAA0572   491 IHFFDHASAALARK----KGKGLHKDVV    514  

SAC3_GANP: domain 1 of 1, from 698 to 924: score 347.7, E = 1.2e-100
                   *->erpnPeeLrplkvLlktldyLvdkildqaeyeaeraWYsfvddrlrs
                      e+p+P+eLrp +vL +t+dyLv++i+dq+e+++++ WY+fv++r+r 
   mKIAA0572   698    EEPLPHELRPSAVLSRTMDYLVTQIMDQKEGSLRD-WYDFVWNRTRG 743  

                   irqDltvqgvedsitvkdyEsferyHilslarlalEegdeqFDlqqelee
                   ir+D+t+q+++d++tv ++E+++r+Hi++ a++++Ee++++FD+++++e+
   mKIAA0572   744 IRKDITQQHLCDPLTVSLIEKCTRFHIHC-AHFMCEEPMSSFDAKINNEN 792  

                   lnkClgllqLkelYqdlkkkleecpneaefrigynlLyklLaslndpdfh
                   ++kC  l++Lke+Yqdl++k+++c++eaef+ gyn+L+    +ln +d++
   mKIAA0572   793 MTKC--LQSLKEMYQDLRNKGVFCASEAEFQ-GYNVLL----NLNKGDIL 835  

                   telellDdppkevredpyvktalqLeaalmegnnTEacNLYnkffrllqk
                   +e++++   +++vr++p+v++a+q  aal+++n       +++ff+l+q+
   mKIAA0572   836 REVQQF---HPDVRNSPEVNFAVQAFAALNSNN-------FVRFFKLVQS 875  

                   nnqppylcdysclmddifldtiRkealrvisksYnsr...hqkiplkyla
                      ++yl  ++cl++ +++++iRk alr+++++Y+++++++ ++pl+ ++
   mKIAA0572   876 ---ASYL--NACLLH-CYFNQIRKDALRALNVAYTVStrrSTVFPLDGVV 919  

                   elLgf<-*
                   ++L+f   
   mKIAA0572   920 RMLLF    924  

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