hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg07960/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0569  ( 1248 res)   mbg07960

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                    117.4    1.6e-30   8
HOX      Homeodomain                                     19.7     0.0038   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C2H2   1/8     244   267 ..     1    23 []    26.1   0.0048
ZnF_C2H2   2/8     274   296 ..     1    23 []    30.6  0.00022
ZnF_C2H2   3/8     315   337 ..     1    23 []    28.3   0.0011
ZnF_C2H2   4/8     343   363 ..     1    23 []     9.4       27
ZnF_C2H2   5/8     614   634 ..     1    23 []     5.3       81
HOX        1/1     677   739 ..     1    63 []    19.7   0.0038
ZnF_C2H2   6/8    1032  1054 ..     1    23 []    25.0     0.01
ZnF_C2H2   7/8    1060  1082 ..     1    23 []    19.4      0.5
ZnF_C2H2   8/8    1088  1109 ..     1    23 []    19.8     0.39

Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 8, from 244 to 267: score 26.1, E = 0.0048
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      ++Cp+ C++ +++ ++Lk+H++ +H   
   mKIAA0569   244    LTCPY-CDRGYKRLtSLKEHIKyRH    267  

ZnF_C2H2: domain 2 of 8, from 274 to 296: score 30.6, E = 0.00022
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + Cp+ C+++f  +++L+rHm +H   
   mKIAA0569   274    FSCPL-CSYTFAYRtQLERHMVTH    296  

ZnF_C2H2: domain 3 of 8, from 315 to 337: score 28.3, E = 0.0011
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ Cgk f+ k++Lk+H+r+H   
   mKIAA0569   315    FKCTE-CGKAFKYKhHLKEHLRIH    337  

ZnF_C2H2: domain 4 of 8, from 343 to 363: score 9.4, E = 27
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+Cp  C+k+fs+ +++  H+      
   mKIAA0569   343    YECPN-CKKRFSHSgSYSSHIS--    363  

ZnF_C2H2: domain 5 of 8, from 614 to 634: score 5.3, E = 81
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C++ C++sf+ +  L +H r     
   mKIAA0569   614    FSCQF-CKESFPGPiPLHQHER--    634  

HOX: domain 1 of 1, from 677 to 739: score 19.7, E = 0.0038
                   *->krrkRtsftpeQleeLEkeFeknpYPsreereeLAkeLgLterqVkv
                      +  +  +  ++  ++L+++++ n+ P+++e+ +++   gL+++ Vk 
   mKIAA0569   677    GLTSPINPYKDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKE 723  

                   WFQNRRakwkrqekkk<-*
                   WF  R   +  ++++    
   mKIAA0569   724 WFEQRKVYQYSNSRSP    739  

ZnF_C2H2: domain 6 of 8, from 1032 to 1054: score 25.0, E = 0.01
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ C+k+f   ++L rH + H   
   mKIAA0569  1032    YACDL-CDKTFQKSsSLLRHKYEH    1054 

ZnF_C2H2: domain 7 of 8, from 1060 to 1082: score 19.4, E = 0.5
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C+i C+k f++k++L++H r H   
   mKIAA0569  1060    HQCQI-CKKAFKHKhHLIEHSRLH    1082 

ZnF_C2H2: domain 8 of 8, from 1088 to 1109: score 19.8, E = 0.39
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk+fs+ +++ +Hm  H   
   mKIAA0569  1088    YQCDK-CGKRFSHSgSYSQHMN-H    1109 

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