hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg07960/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0569  ( 1248 res)   mbg07960

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                         141.4    1.7e-38   8
Homeobox Homeobox domain                                -15.3       0.41   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C2H2    1/8     244   267 ..     1    24 []    26.3  0.00072
zf-C2H2    2/8     274   296 ..     1    24 []    29.6  7.4e-05
zf-C2H2    3/8     315   337 ..     1    24 []    32.4    1e-05
zf-C2H2    4/8     343   367 ..     1    24 []    23.1   0.0065
zf-C2H2    5/8     614   637 ..     1    24 []    14.8      2.1
Homeobox   1/1     682   729 ..     1    57 []   -15.3     0.41
zf-C2H2    6/8    1032  1054 ..     1    24 []    25.6   0.0012
zf-C2H2    7/8    1060  1082 ..     1    24 []    23.2    0.006
zf-C2H2    8/8    1088  1114 ..     1    24 []    17.6      0.3

Alignments of top-scoring domains:
zf-C2H2: domain 1 of 8, from 244 to 267: score 26.3, E = 0.00072
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                       +Cp +C++ ++r  +Lk H++ +H   
   mKIAA0569   244    LTCP-YCDRGYKRLTSLKEHIKYrH    267  

zf-C2H2: domain 2 of 8, from 274 to 296: score 29.6, E = 7.4e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++Cp  C ++F  + +L+rH+ tH   
   mKIAA0569   274    FSCP-LCSYTFAYRTQLERHMVTH    296  

zf-C2H2: domain 3 of 8, from 315 to 337: score 32.4, E = 1e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC+ +Cgk+F+ k++Lk Hlr+H   
   mKIAA0569   315    FKCT-ECGKAFKYKHHLKEHLRIH    337  

zf-C2H2: domain 4 of 8, from 343 to 367: score 23.1, E = 0.0065
                   *->ykCpfdCgksFsrksnLkrHlrt..H<-*
                      y+Cp  C+k+Fs+++++ +H+ ++++   
   mKIAA0569   343    YECP-NCKKRFSHSGSYSSHISSkkC    367  

zf-C2H2: domain 5 of 8, from 614 to 637: score 14.8, E = 2.1
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      ++C+  C++sF  +  L++H r  +   
   mKIAA0569   614    FSCQ-FCKESFPGPIPLHQHERYlC    637  

Homeobox: domain 1 of 1, from 682 to 729: score -15.3, E = 0.41
                   *->rrkRTtftpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvW
                           ++ ++   +L++++++n+ P+++e  +++   gL+ + Vk W
   mKIAA0569   682    ----INPYKDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEW 724  

                   FQNRRaKwKk<-*
                   F      ++k   
   mKIAA0569   725 F-----EQRK    729  

zf-C2H2: domain 6 of 8, from 1032 to 1054: score 25.6, E = 0.0012
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+  C+k+F  +s+L rH+  H   
   mKIAA0569  1032    YACD-LCDKTFQKSSSLLRHKYEH    1054 

zf-C2H2: domain 7 of 8, from 1060 to 1082: score 23.2, E = 0.006
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +C+k+F++k++L  H r H   
   mKIAA0569  1060    HQCQ-ICKKAFKHKHHLIEHSRLH    1082 

zf-C2H2: domain 8 of 8, from 1088 to 1114: score 17.6, E = 0.3
                   *->ykCpfdCgksFsrksnLkrHlrt....H<-*
                      y+C+ +Cgk+Fs+++++ +H++ + + +   
   mKIAA0569  1088    YQCD-KCGKRFSHSGSYSQHMNHrysyC    1114 

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