hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg05630/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0567  ( 979 res)   mbg05630

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DYNc     Dynamin, GTPase                                 34.0    3.5e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DYNc       1/1     309   559 ..     1   246 []    34.0  3.5e-10

Alignments of top-scoring domains:
DYNc: domain 1 of 1, from 309 to 559: score 34.0, E = 3.5e-10
                   *->mekliplvnklqdafssLGiekdLdLPqIAVvGgQSaGKSSvLEnlv
                       +    + + l d  +s   + +  LP + VvG+QSaGK SvLE + 
   mKIAA0567   309    IDMYSEVLDVLSDYDASYNTQDH--LPRVVVVGDQSAGKTSVLEMIA 353  

                   GkdFLPRGsG.IVTRrPLiLkLikiPtstEykeflhykniskklqhfdEv
                        PRGsG+  TR P    L + P         +     +k ++    
   mKIAA0567   354 QARIFPRGSGeMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAAL 403  

                   rneIenetDrVtGtnkgISgvlInLrvySPyVlnLTLIDLPGitkVavgd
                   r eIe    +       +S++ I+L v  P    + L+DLPG+       
   mKIAA0567   404 RHEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSG 453  

                   QPqDIeeQIKklIkkfIskeetliLaVvPaNvDlAnsdALKlAkEVDPkG
                     +D  e I  + k       ++iL +    vD   s    l    DP G
   mKIAA0567   454 MAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPHG 503  

                   eRTiGviTKlDLvD..eGTdeYardileNkllPLRr.GYigVvn...RsQ
                    RTi v+TK DL  ++      +  i+e kl P+   GY  Vv +++ s 
   mKIAA0567   504 RRTIFVLTKVDLAEknVASPSRIQQIIEGKLFPMKAlGYFAVVTgkgNSS 553  

                   kDIegr<-*
                     Ie     
   mKIAA0567   554 ESIEAI    559  

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