hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg09880/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0566 ( 1521 res) mbg09880 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Hydrolase haloacid dehalogenase-like hydrolase 14.6 0.023 1 E1-E2_ATPase E1-E2 ATPase -131.0 0.3 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- E1-E2_ATPase 1/1 134 400 .. 1 245 [] -131.0 0.3 Hydrolase 1/1 438 1079 .. 1 183 [] 14.6 0.023 Alignments of top-scoring domains: E1-E2_ATPase: domain 1 of 1, from 134 to 400: score -131.0, E = 0.3 *->villivllnatlefyqesrAekAleaLkklvpptAtVlRdGgkeeei il++ + + e y++ r+ + L + V + + + mKIAA0566 134 FILAVTAIKDLWEDYSRHRSDHEINHL------GCLVFSRE-EKKYV 173 p..aeeLvpGDiVevkpGdrVPADgrvvege.....stLkVDESaLTGES ++ +e+++GD V++ +++PAD+ +++++++++ + + ++L GE mKIAA0566 174 NryWKEIRVGDFVRLCCNEIIPADILLLSSSdpdglC--HIETANLDGET 221 lPVeKhsdvvtp...................................... + vv++ ++ ++ ++ + ++ + ++++++ ++ ++ ++++ mKIAA0566 222 NLKRR--QVVRGfselvsefnpltftsviecekpnndlsrfrgyimhsng 269 dnp.lergnmVfaGTlvvsGslt.gvVtatGddTflgkIakLVeeAqs.. + ++l++ n++ G ++++ +++ g+V+ G +T +L ++ + mKIAA0566 270 EKAgLHKENLLLRGCTIRNTEAVaGIVIYAGHETK-----ALLNNSGPry 314 sktPlQrlldkfgkiltpvililavlvfiiwllrnfnaafggswleg... ++ l+r ++ ++++ + +++ ++ l+ + + e++ mKIAA0566 315 KRSQLERQMNCDVLWCVLLLVCISLFSAVGHGLW------IRRYQEKkal 358 ................llyalifavallVaAcPegLplvvtvalalGtgr + +++++++ ++ + ++y + +++ +l + +P+ L mKIAA0566 359 fdvpesdgsslspataAVYSFFTMIIVLQVLIPISL-------------- 394 mAkkgaLVKglpAvEt<-* ++E mKIAA0566 395 ----------YVSIEI 400 Hydrolase: domain 1 of 1, from 438 to 1079: score 14.6, E = 0.023 *->ikavvFDkDGTLtdgkeppiaeaiveaaaelgllpleevekllgrgl ik ++ Dk+GTLt+ + + ++ +v+ + ++ ++ +++ + ++ mKIAA0566 438 IKYIFSDKTGTLTEN-KMVFRRCTVSGIEYSHDANAQRLARYQEADS 483 .gerilleggltaell.................................. ++ + + + +t+ + ++++++ + ++++ + +++++++++ + ++ + mKIAA0566 484 eE-EEVVSKVGTISHRgstgshqsiwmthktqsikshrrtgsraeakras 532 .................................................. ++++ +++ +++ +++++ ++ ++ ++ ++ +++ + +++ mKIAA0566 533 mlskhtafsspmekditpdpkllekvsecdrflaiarhqehplahlspel 582 .................................................. ++ + + ++ ++++ ++ + + + + +++ ++ ++ ++ ++ mKIAA0566 583 sdvfdffialticntvvvtspdqprqkvrvrfelkspvktiedflrrftp 632 .................................................. ++ ++ ++ ++ +++++++++++ ++ + ++ + +++ + + ++ mKIAA0566 633 srlasgcssignlstsksshksgsaflpslsqdsmllgleeklgqtapsi 682 .................................................. +++ + + +++ ++ +++ + +++ ++ +++ + + +++++ mKIAA0566 683 asngyasqagqeeswasecttdqkcpgeqreqqegelryeaespdeaalv 732 .................................................. + + ++ ++ + + ++ ++ + + ++ + ++ +++ + + mKIAA0566 733 yaarayncalvdrlhdqvsvelphlgrltfellhtlgfdsirkrmsvvir 782 .................................................. ++ +++ + +++ ++ + + ++++ ++++ ++ ++++ + + mKIAA0566 783 hpltdeinvytkgadsvvmdlllpcssddargrhqkkirsktqnylnlya 832 .................................................d ++ ++ ++ ++++ ++ + + + +++++ + + +++ mKIAA0566 833 veglrtlciakrvlskeeyacwlqshieaeasvesreellfqsavrlerN 882 .evlglial.dklypgarealkaLkerGikvailTggdr.naeallealg ++lg+ +d+l +g++e++++L+++G+++++lTg+ +++a mKIAA0566 883 lHLLGATGIeDRLQEGVPETIAKLRQAGLQIWVLTGDKQeTAIN------ 926 la.lfdvivdsddvggvgpivvgKPkpeifllalerlgvkpeevg..... +a ++ + +++v ++a+ +l + + +++ mKIAA0566 927 IAyACKLLDHGEEVI---------TLNADSQEACAALLDQCL--Syvqsr 965 .................................................. +++++ ++++++ + + + ++ +++++ +++++ ++++ +++ + mKIAA0566 966 nprstlqnsesnlsvgfsfnpvststdaspspslvidgrslayaleksle 1015 ..................................pe.vlmvGDgvnDapa ++ ++ ++ ++++ +++ + +++ +l++GDg nD+ + mKIAA0566 1016 dkflflakqcrsvlccrstplqksmvvklvrsklKAmTLAIGDGANDVSM 1065 laaAGvgvamgngg<-* + A+vgv + mKIAA0566 1066 IQVADVGVGISGQE 1079 //