hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm09246/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0564  ( 1246 res)   mpm09246

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
VWA      von Willebrand factor (vWF) type A domain       49.4    4.6e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
VWA        1/1    1053  1242 ..     1   193 []    49.4  4.6e-10

Alignments of top-scoring domains:
VWA: domain 1 of 1, from 1053 to 1242: score 49.4, E = 4.6e-10
                   *->plDvvfllDgSgSmg.....gnrfekvkefv.klveqld....gdrv
                      p+ + +++D+SgSm + ++ ++r+e+  e+v +++e++++ +++  +
   mKIAA0564  1053    PKRLRLVVDVSGSMYrfngvDRRLERSMEAVcMVMEAFEnyeeKFKY 1099 

                   glvqFss..dvrvefpln..sqskdallealaslsykglkdyslgggTnl
                    + + s+++    ++p+n+  ++ ++ le+l+ ++    + +++  g ++
   mKIAA0564  1100 DIAGHSGdgYNIKLVPVNqiPKNNKQRLEILKTMHE---HSQFCMSGDHT 1146 

                   g.ALqyalenlfsesag.rrgagratkiSnvpkvliliTDGesndggddp
                    ++ ++a++  ++ ++++ +             ++i+++D + ++  +++
   mKIAA0564  1147 LeGTEHAIKD-ITTEEAdEY-------------FVIILSDANLSR--YGI 1180 

                   edileaakelkrsgvkvfvigvgnade.elkeiasep.gehvffdvsdve
                    +++ a +   +  v+ f+i++g+   ++  ++ +  +  + f+ ++d++
   mKIAA0564  1181 NPARFAQILTSDPQVNAFAIFIGS-LGdQAARLQRTLpAGRSFI-AMDTK 1228 

                   dlpslldllidlll<-*
                     p++l+ ++++ +   
   mKIAA0564  1229 KIPQILQQIFTSTM    1242 

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