hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg14936/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0562  ( 906 res)   mbg14936

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
HEAT     HEAT repeat                                     31.7    1.7e-05   2
UVR      UvrB/uvrC motif                                 13.2        0.1   1
zf-TRAF  TRAF-type zinc finger                            6.9       0.12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
UVR        1/1     194   229 ..     1    36 []    13.2      0.1
HEAT       1/2     502   538 ..     1    36 []    15.3      1.5
HEAT       2/2     583   619 ..     1    36 []    16.5     0.65
zf-TRAF    1/1     753   806 ..     1    60 []     6.9     0.12

Alignments of top-scoring domains:
UVR: domain 1 of 1, from 194 to 229: score 13.2, E = 0.1
                   *->ekeikeLekeMeeAaenldFEkAAelRDeIqaLkeq<-*
                      +++i++L + + eA++ +++  A +l   I++L+++   
   mKIAA0562   194    AQIIRRLDERKREAVKKERYDHAKKLKQAIADLQKV    229  

HEAT: domain 1 of 2, from 502 to 538: score 15.3, E = 1.5
                   *->e.lldellplllkllnDpdpeVReaAaeaLgalaevl<-*
                       +++++ +plll  ++D++++ R +A++ ++++a +    
   mKIAA0562   502    ThCVERAFPLLLARAGDSSARLRVMALNFIQEMALFK    538  

HEAT: domain 2 of 2, from 583 to 619: score 16.5, E = 0.65
                   *->e.lldellplllkllnDpdpeVReaAaeaLgalaevl<-*
                        ++d+++ + +++l++ ++eVRe+A++ + ++++++   
   mKIAA0562   583    GfTVDNVMKFAVSALEHRVYEVRETAVRIILDMYRQH    619  

zf-TRAF: domain 1 of 1, from 753 to 806: score 6.9, E = 0.12
                   *->HekntCPfvpvpCpnekCgvkkilRedlpdHlsedCpkre..vpCpF
                      H+  +C +    C++  C+ + ++ ++l +Hl ++C +r++  +Cp 
   mKIAA0562   753    HYWKHCLMLT-RCDH--CR-QVVEISSLTEHLLTECDRRDgfGKCPR 795  

                   keyGCkvevkrenlQ<-*
                       C +++++e+l    
   mKIAA0562   796 ----CSEAIPKEELP    806  

//