hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mtk/mtk01891/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0561 ( 415 res) mtk01891 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PDZ Domain present in PSD-95, Dlg, and ZO-1/2. 65.1 9.1e-15 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PDZ 1/1 68 148 .. 1 80 [] 65.1 9.1e-15 Alignments of top-scoring domains: PDZ: domain 1 of 1, from 68 to 148: score 65.1, E = 9.1e-15 *->gglGfsivg.............gifvssvvpGspAakaGrkslglLk + +Gfs++ + ++++ + +++v sv++GspA aG L+ mKIAA0561 68 KKYGFSLRAirvymgdsdvytvHHVVWSVEEGSPAQEAG------LR 108 vGDvIleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-* +GD I+ +NG +sv gl h ++v+ll k+g+ k++L + mKIAA0561 109 AGDLITHING-ESVLGLVHMDVVELLLKSGN-----KISLRTTALE 148 //