hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg01260/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0559  ( 1592 res)   mbg01260

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
C2       Protein kinase C conserved region 2 (CalB)      86.8    2.6e-21   1
PDZ      Domain present in PSD-95, Dlg, and ZO-1/2.      61.7    9.1e-14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PDZ        1/1    1168  1247 ..     1    80 []    61.7  9.1e-14
C2         1/1    1365  1479 ..     1    92 []    86.8  2.6e-21

Alignments of top-scoring domains:
PDZ: domain 1 of 1, from 1168 to 1247: score 61.7, E = 9.1e-14
                   *->gglGfsivg...........gifvssvvpGspAakaGrkslglLkvG
                      +glG++ivg+++ ++++++ g+++++++pG+ A+++G+     L +G
   mKIAA0559  1168    NGLGIRIVGgkeipghsgeiGAYIAKILPGGSAEHSGK-----LIEG 1209 

                   DvIleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                    ++le+NG ++++++t+ee++ ++ + +g     + ++ v+ +    
   mKIAA0559  1210 MQVLEWNG-IPLTSKTYEEVQSIINQQSG-----EAEICVRLDL    1247 

C2: domain 1 of 1, from 1365 to 1479: score 86.8, E = 2.6e-21
                   *->tLtvkiisArnLp........DPYVkvs...................
                       L ++i++ArnL ++++++ +DP+Vkv+  +++++    ++ +   +
   mKIAA0559  1365    NLIIHILQARNLVprdnngysDPFVKVYllpgrgqvmvvqnasveyk 1411 

                   .kTkvvkktlsgfNPvWnEesetFeFevpp......s.LeieVyDk....
                   ++Tk v+k+l   NP+Wn+   t+ ++ ++ ++  +++Le++V+D+++ +
   mKIAA0559  1412 rRTKYVQKSL---NPEWNQ---TVIYKSISmeqlmkKtLEVTVWDYdrfs 1455 

                   ..dfiGrvtippnnahqhsadglihlsell.ggrh.kl<-*
                   ++df+G+v i+              ls+  + + ++++   
   mKIAA0559  1456 snDFLGEVLID--------------LSSTShLDNTpRW    1479 

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