hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg01260/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0559  ( 1592 res)   mbg01260

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
C2       C2 domain                                      120.4    3.3e-32   1
PDZ      PDZ domain (Also known as DHR or GLGF)          42.8      8e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PDZ        1/1    1159  1244 ..     1    82 []    42.8    8e-09
C2         1/1    1366  1464 ..     1    88 []   120.4  3.3e-32

Alignments of top-scoring domains:
PDZ: domain 1 of 1, from 1159 to 1244: score 42.8, E = 8e-09
                   *->evtlekevkrgglGfsikggsdk.......givvsevlpGsgaAeag
                      + +++   +++glG++i+gg++ ++++++ g++++++lpG g+Ae +
   mKIAA0559  1159    DSKDHTV-SGNGLGIRIVGGKEIpghsgeiGAYIAKILPG-GSAEHS 1203 

                   GrLkeGDqIlsvNGqdvenlsheravlalkgsggsevtLtil<-*
                   G+L eG q+l+ NG ++++ + e+++ ++ + +g e  + ++   
   mKIAA0559  1204 GKLIEGMQVLEWNGIPLTSKTYEEVQSIINQQSG-EAEICVR    1244 

C2: domain 1 of 1, from 1366 to 1464: score 120.4, E = 3.3e-32
                   *->LrVtvieAknLppkDfkngksDPYVkvslggdkkdqk..........
                      L +++++A+nL p+D  ng sDP+Vkv+l++ ++ q+   ++ + + 
   mKIAA0559  1366    LIIHILQARNLVPRD-NNGYSDPFVKVYLLPGRG-QVmvvqnasvey 1410 

                   .kkTkvikktlNPvWNEtFtFe.vpppdlqe.tLeieVyDydrfgrddfl
                   +++Tk + k+lNP+WN+t  + +++ ++l ++tLe++V+Dydrf+++dfl
   mKIAA0559  1411 kRRTKYVQKSLNPEWNQTVIYKsISMEQLMKkTLEVTVWDYDRFSSNDFL 1460 

                   Gevs<-*
                   Gev    
   mKIAA0559  1461 GEVL    1464 

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