hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg01462/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0558  ( 1098 res)   mbg01462

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
VWA      von Willebrand factor (vWF) type A domain       88.4    8.8e-22   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
VWA        1/1     240   415 ..     1   193 []    88.4  8.8e-22

Alignments of top-scoring domains:
VWA: domain 1 of 1, from 240 to 415: score 88.4, E = 8.8e-22
                   *->plDvvfllDgSgSmggnrfekvkefv.klveqld.gdrvglvqFssd
                      p+D v+++D+SgS++g ++ ++k+ v +++++l+++d+v +  F+++
   mKIAA0558   240    PKDMVIIVDVSGSVSGLTLKLMKTSVcEMLDTLSdDDYVNVASFNEK 286  

                   vrvefpln......sqskdallealaslsykglkdyslgggTnlg.ALqy
                   ++ ++ +++  + + ++k+ ++ea++++         ++g T    + +y
   mKIAA0558   287 AQPVSCFThlvqanVRNKKVFKEAVQGMV--------AKGTTGYKaGFEY 328  

                   alenlfsesag.rrgagratkiSnvpkvliliTDGesndggddpedilea
                   a+++l+++   + +          ++k ++++TDG  +       +++++
   mKIAA0558   329 AFDQLQNSNITrAN----------CNKMIMMFTDGGED-------RVQDV 361  

                   akelkrsg..vkvfvigvgna..de.elkeiasep.gehvffdvsdvedl
                   +++    +++v+vf++ vg+++ d + l+ +a+ ++g ++          
   mKIAA0558   362 FEKYNWPNrtVRVFTFSVGQHnyDVtPLQWMACTNkGYYFE--------I 403  

                   pslldllidlll<-*
                   ps+ +  i+ ++   
   mKIAA0558   404 PSIGAIRINTQE    415  

//