hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg01462/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0558  ( 1098 res)   mbg01462

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Cache_1  Cache domain                                   133.4    4.1e-36   1
VWA      von Willebrand factor type A domain             85.3    1.2e-21   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
VWA        1/1     242   420 ..     1   195 []    85.3  1.2e-21
Cache_1    1/1     436   525 ..     1    92 []   133.4  4.1e-36

Alignments of top-scoring domains:
VWA: domain 1 of 1, from 242 to 420: score 85.3, E = 1.2e-21
                   *->DivFllDgSgSigeenlFekvkdFvkklveknldigpdgtrVglvqY
                      D+v+++D+SgS+++   ++++k+ v ++++     + d++ V++  +
   mKIAA0558   242    DMVIIVDVSGSVSGLT-LKLMKTSVCEMLD----TLSDDDYVNVASF 283  

                   ssdvrtefsLndysskddllaav...lknlrylgGgTnNtgkALkyalen
                   +  ++++  ++     + ++++v +++ +    +G+T    ++++ya ++
   mKIAA0558   284 NEKAQPVSCFTHLVQANVRNKKVfkeAVQGMVAKGTTG-YKAGFEYAFDQ 332  

                   lfsstMikrnrsagsRpenapkvlillTDGksndggdve.aaaalrdkkk
                   l+ s        +  R  n +k+++++TDG  +  +dv ++ +   +   
   mKIAA0558   333 LQNS--------NITRA-NCNKMIMMFTDGGEDRVQDVFeKYNWPNRT-- 371  

                   gvgitvfavGvGgdvdeaeLr.iasepeseghvfyvedfdalwlelqdiq
                    v++++f+vG+ +++d   L+ +a  +++ g++f +++  a+ ++ q++ 
   mKIAA0558   372 -VRVFTFSVGQ-HNYDVTPLQwMA--CTNKGYYFEIPSIGAIRINTQEYL 417  

                   eql<-*
                   + l   
   mKIAA0558   418 DVL    420  

Cache_1: domain 1 of 1, from 436 to 525: score 133.4, E = 4.1e-36
                   *->wTePYvdaastgdmViTvsvPvydrtneqrnktn.dngdllGVvgiD
                      wT++Y+da  ++++V+T ++Pv+++t+  +++++++n+ +lGV+giD
   mKIAA0558   436    WTNVYEDAL-GLGLVVTGTLPVFNLTQ--DGPGEkKNQLILGVMGID 479  

                   vpledLlkltksiklGktGYaFivdnnGkvlaHPnlrpvtkllkdw<-*
                   v l d+++lt++++lG +GY+F++d nG+vl+HPnl+p t++  ++   
   mKIAA0558   480 VALNDIKRLTPNYTLGANGYVFAIDLNGYVLLHPNLKPQTTNFREP    525  

//