hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg09350/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0554  ( 684 res)   mbg09350

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
FCH      Fes/CIP4 homology domain                       120.8    2.5e-32   1
SH3_1    SH3 domain                                      53.5    4.6e-12   1
SH3_2    Variant SH3 domain                              31.3    2.3e-05   1
HR1      Hr1 repeat                                       7.5       0.34   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
FCH        1/1      69   162 ..     1   107 []   120.8  2.5e-32
HR1        1/1     483   558 ..     1    87 []     7.5     0.34
SH3_1      1/1     620   676 ..     1    58 []    53.5  4.6e-12
SH3_2      1/1     621   676 ..     1    69 []    31.3  2.3e-05

Alignments of top-scoring domains:
FCH: domain 1 of 1, from 69 to 162: score 120.8, E = 2.5e-32
                   *->dgFwselnsddgykaLlkrlddglrlledlkkFlreRakiEeeYAkk
                      +++++el  +d+++ L+k++++g+++le+++kF++eR++iE +YAk+
   mKIAA0554    69    MSWGTEL--WDQFDNLEKHTQWGIDILEKYIKFVKERTEIELSYAKQ 113  

                   LqklskkyfnkkRkSdgsvskdsltekgpdslsslkkawnvllsetdqls
                   L++lskky++kk          s+ e+++ ++++  ka+ + l+e+++ +
   mKIAA0554   114 LRNLSKKYQPKK---------NSKEEEEYKYTAC--KAFLSTLNEMNDYA 152  

                   klHsqlseqL<-*
                    +H+ +se++   
   mKIAA0554   153 GQHEVISENM    162  

HR1: domain 1 of 1, from 483 to 558: score 7.5, E = 0.34
                   *->lllerLrkkLevElkireGaEkllRltsdekLlllkketkevkrkak
                      +++++L +++ +E  +r+ + k++ ++ ++            +  + 
   mKIAA0554   483    QKVDDLNREIQKETDQRDAITKMKDVYLKNP-----------QMGDP 518  

                   seaeeklvESnqklelLkqsLerLeelhqdsdpegesdte<-*
                   + +  kl+E+ q++e L+ + +++e+  ++++   + ++e   
   mKIAA0554   519 ASLDQKLTEVTQNIEKLRLEAQKFEAWLAEVEGRLPARSE    558  

SH3_1: domain 1 of 1, from 620 to 676: score 53.5, E = 4.6e-12
                   *->kkvvALYDYearesdELsFkkGDvitvleksdd.gWWkgrlkgtgGk
                       +++ALY +e+++++ +s  +G+++ v+e+++++gW + r++   ++
   mKIAA0554   620    GTCKALYTFEGQNEGTISVVEGETLSVIEEDKGdGWTRIRRNE--DE 664  

                   eGliPsNYVepv<-*
                   eG++P++YVe +   
   mKIAA0554   665 EGYVPTSYVEVY    676  

SH3_2: domain 1 of 1, from 621 to 676: score 31.3, E = 2.3e-05
                   *->ygraiedyvaAtdknenleeeeLslkkGdvvkvidvggskddd.gww
                       ++a+  +++ ++++       +s+ +G+++ vi    ++d ++gw 
   mKIAA0554   621    TCKALYTFEG-QNEGT------ISVVEGETLSVI----EEDKGdGWT 656  

                   lgeslggGrrrRGlvPssaveel<-*
                   + ++ ++ ++  G+vP+s+ve++   
   mKIAA0554   657 RIRR-NEDEE--GYVPTSYVEVY    676  

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