hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg05521/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0551 ( 453 res) mbg05521 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- CNH Domain found in NIK1-like kinases, mouse cit 245.1 5.7e-69 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- CNH 1/1 206 453 .] 1 375 [] 245.1 5.7e-69 Alignments of top-scoring domains: CNH: domain 1 of 1, from 206 to 453: score 245.1, E = 5.7e-69 *->naakwnhpitcdqLWGkiLLvgTeeGLYvlnisrqlnkdhegtlekl +++++n++i+c++LWG++LLvgTe GL++l++s+q g+++ l mKIAA0551 206 YKKRFNSEILCAALWGVNLLVGTENGLMLLDRSGQ------GKVYNL 246 isrrsvtqiwvleennvLlmisGkkpqlyshpLsaltekkltqgntpiik i rr+++q++vle++nvL++isGkk +l++++Ls+l+++ mKIAA0551 247 INRRRFQQMDVLEGLNVLVTISGKKNKLRVYYLSWLRNR----------- 285 dalgsarlviRknvlttkipdvkGNchlcavkvngkrtgilflcaalqss l+++ v++k+++ ++++d++G c++++v v+++r i+fl+ al+ + mKIAA0551 286 -ILHNDPEVEKKQGW-ITVGDLEG-CIHYKV-VKYER--IKFLVIALKNA 329 VvllaqwynplkkfklvksSNNiLNNEledikkflkklivplplfvelvs V+++a++++p++kf+ +ks ++ + + pl+v+l++ mKIAA0551 330 VEIYAWAPKPYHKFMAFKS----------------FADLQHKPLLVDLTV 363 ssfelpkvciGsdkPVGGdaggdvvqfhqdphlNslkfkeslvskedlsl ++ +++kv++Gs + g++v++++ + + +d+++ mKIAA0551 364 EEGQRLKVIFGSHT------GFHVIDVD-------------SGNSYDIYI 394 pfaseetssddaTCkpisvvqvqasdgGqRdelLlcydefgvfVNlqGle p++++ + +p+++v+++ +dg +e L+cy+++gv+VN++G mKIAA0551 395 PSHIQGNI------TPHAIVILPKTDG---MEMLVCYEDEGVYVNTYG-- 433 vrrsrkpiltwefmpesfayvepyllafhsngieIrsiktgelNlqelad r +++++l+w++mp+s+ g l mKIAA0551 434 -RITKDVVLQWGEMPTSV----------------------GRL------- 453 rsiikarkiRlLgsCeisdrkIllsssp<-* mKIAA0551 - ---------------------------- - //