hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg05521/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0551  ( 453 res)   mbg05521

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CNH      CNH domain                                     199.8    4.2e-56   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CNH        1/1     211   453 .]     1   363 []   199.8  4.2e-56

Alignments of top-scoring domains:
CNH: domain 1 of 1, from 211 to 453: score 199.8, E = 4.2e-56
                   *->kvnwihaitggqnLLvGTeeGLYvlnrsdqhdaflgklvkiigrrsv
                      ++++ +a ++g+nLLvGTe GL++l+rs+q     gk++ +i+rr++
   mKIAA0551   211    NSEILCAALWGVNLLVGTENGLMLLDRSGQ-----GKVYNLINRRRF 252  

                   tqlevieelnlLllLseGKkrhLylhpLsaLetekkdtaqgsskinklpe
                   +q++v+e+ln+L+++s GKk++L++++Ls+L                 ++
   mKIAA0551   253 QQMDVLEGLNVLVTIS-GKKNKLRVYYLSWL-----------------RN 284  

                   ktlarrfavskKipetkghCklccvgfiregycggtkFlcvvAlksddls
                   ++l+ +++v+kK ++ +++++++c++ + + y+++ kFl++ Alk     
   mKIAA0551   285 RILHNDPEVEKKQGWITVGDLEGCIHYKVVKYERI-KFLVI-ALKN---- 328  

                   tsillyeWPlkeyklpnnyekllkfinrkktrfrkpkeldvpepvqsief
                     +++y+W                        ++kp++++++++++    
   mKIAA0551   329 -AVEIYAW------------------------APKPYHKFMAFKSFADLQ 353  

                   lkpslcvGcskgfeillvlfgss.gfhslsleGqseaaldlllPsndlsl
                   +kp+l++++++ +++l+v+fgs +gfh+++++  s++++d++ Ps+ +  
   mKIAA0551   354 HKPLLVDLTVEEGQRLKVIFGSHtGFHVIDVD--SGNSYDIYIPSHIQGN 401  

                   efakklsQsvdalrakevvsaiqidrdeyLLCfsefgvfVNlqGrrsrkk
                   +             ++ +v+++  d++e L+C++++gv+VN++Gr +++ 
   mKIAA0551   402 I------------TPHAIVILPKTDGMEMLVCYEDEGVYVNTYGRITKDV 439  

                   kdiselmWegaPesfayslypyllafhdngieIrsletgeltqeladrvq
                       +l+W ++P+s+  +                      l         
   mKIAA0551   440 ----VLQWGEMPTSVG-R----------------------L--------- 453  

                   tillnkirllvslrsls<-*
                                       
   mKIAA0551     - -----------------    -    

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