hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg18962/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0550  ( 612 res)   mbg18962

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TSP1     Thrombospondin type 1 repeats                  180.7    1.4e-49   4
HormR    Domain present in hormone receptors             82.0    7.3e-20   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TSP1       1/4     156   205 ..     1    66 []    56.1  4.4e-12
TSP1       2/4     210   260 ..     1    66 []    57.5  1.8e-12
TSP1       3/4     265   315 ..     1    66 []    51.1  1.4e-10
TSP1       4/4     320   370 ..     1    66 []    39.9  3.3e-07
HormR      1/1     372   438 ..     1    89 []    82.0  7.3e-20

Alignments of top-scoring domains:
TSP1: domain 1 of 4, from 156 to 205: score 56.1, E = 4.4e-12
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      + eWs WS+CS vtCG G      ++RtR+    c+sp +       
   mKIAA0550   156    VEEWSQWSACS-VTCGQG-----SQVRTRT----CVSPYG------- 185  

                   epCs....EtrpCntqpnLqpCp<-*
                    +Cs++ +E+r Cn     + Cp   
   mKIAA0550   186 THCSgplrESRVCNNT---ALCP    205  

TSP1: domain 2 of 4, from 210 to 260: score 57.5, E = 1.8e-12
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      w eWs+WS CS  tCG+G      rtRtR      c pp+     gg
   mKIAA0550   210    WEEWSPWSLCS-FTCGRG-----QRTRTR-----SCTPPQ----YGG 241  

                   epCs....EtrpCntqpnLqpCp<-*
                   +pC+++++  +pCn       Cp   
   mKIAA0550   242 RPCEgpetHHKPCNIA----LCP    260  

TSP1: domain 3 of 4, from 265 to 315: score 51.1, E = 1.4e-10
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      w eWs+WS CS vtC  G     +++R+R+    c  +       gg
   mKIAA0550   265    WQEWSSWSHCS-VTCSNG-----TQQRSRQ----CTAA-----AHGG 296  

                   epCs....EtrpCntqpnLqpCp<-*
                   ++C ++  E+r+C  +    +C    
   mKIAA0550   297 SECRgpwaESRECYNP----ECT    315  

TSP1: domain 4 of 4, from 320 to 370: score 39.9, E = 3.3e-07
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      w +W+ WS CS ++C gG     + +R R+    c  ++       g
   mKIAA0550   320    WNQWGHWSGCS-KSCDGG-----WERRMRT----CQGAAVT-----G 351  

                   epCs....EtrpCntqpnLqpCp<-*
                   ++C+++++E+r C++q     Cp   
   mKIAA0550   352 QQCEgtgeEVRRCSEQ----RCP    370  

HormR: domain 1 of 1, from 372 to 438: score 82.0, E = 7.3e-20
                   *->tdlgCpatwDgiiCWpsTpaGqlvavpCPeyfsgfsnktggNrtqGn
                      +++ Cp+++   + W++TpaG l++++CP +++g+            
   mKIAA0550   372    PYEICPEDYLISMVWKRTPAGDLAFNQCPLNATGT------------ 406  

                   asRnCtedt.GvGgWsepfpgaeSnrtWpnysnCtsndyeelk<-*
                    sR+C+++++Gv++W++           p +++C sn+y++l+   
   mKIAA0550   407 TSRRCSLSLhGVASWEQ-----------PSFARCISNEYRHLQ    438  

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