hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg18962/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0550  ( 612 res)   mbg18962

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TSP_1    Thrombospondin type 1 domain                   170.5    2.8e-47   4
HRM      Hormone receptor domain                         55.2    1.5e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TSP_1      1/4     157   204 ..     1    55 []    65.8  9.5e-16
TSP_1      2/4     211   259 ..     1    55 []    51.3  2.2e-11
TSP_1      3/4     266   314 ..     1    55 []    51.4  2.1e-11
TSP_1      4/4     321   369 ..     1    55 []    25.2  0.00039
HRM        1/1     373   434 ..     1    76 []    55.2  1.5e-12

Alignments of top-scoring domains:
TSP_1: domain 1 of 4, from 157 to 204: score 65.8, E = 9.5e-16
                   *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete
                       +Ws+WS+CSVTCG G+++R+R+c+sp      g +C g+ +e  ++
   mKIAA0550   157    EEWSQWSACSVTCGQGSQVRTRTCVSPY-----GTHCSGPLRE--SR 196  

                   aCdmmdkC<-*
                   +C++   C   
   mKIAA0550   197 VCNNTALC    204  

TSP_1: domain 2 of 4, from 211 to 259: score 51.3, E = 2.2e-11
                   *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete
                       +Ws+WS CS TCG G+rtR+R+c  p Pq +gg pC+g+ +    +
   mKIAA0550   211    EEWSPWSLCSFTCGRGQRTRTRSCT-P-PQ-YGGRPCEGPETH--HK 252  

                   aCdmmdkC<-*
                   +C +   C   
   mKIAA0550   253 PC-NIALC    259  

TSP_1: domain 3 of 4, from 266 to 314: score 51.4, E = 2.1e-11
                   *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete
                       +Ws WS CSVTC++G+++R R c + a   +gg+ C g+  e  ++
   mKIAA0550   266    QEWSSWSHCSVTCSNGTQQRSRQCTAAA---HGGSECRGPWAE--SR 307  

                   aCdmmdkC<-*
                    C   ++C   
   mKIAA0550   308 EC-YNPEC    314  

TSP_1: domain 4 of 4, from 321 to 369: score 25.2, E = 0.00039
                   *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete
                       +W+ WS CS++C +G   R R+c++ a     g++C+g+ +e  ++
   mKIAA0550   321    NQWGHWSGCSKSCDGGWERRMRTCQGAA---VTGQQCEGTGEE--VR 362  

                   aCdmmdkC<-*
                    C + + C   
   mKIAA0550   363 RC-SEQRC    369  

HRM: domain 1 of 1, from 373 to 434: score 55.2, E = 1.5e-12
                   *->glgCpatwDgivCWPrtpaGqlvvvpCPdyfsGfnydttgedfgnay
                      ++ Cp ++  ++ W+rtpaG l++ +CP ++ G+          +++
   mKIAA0550   373    YEICPEDYLISMVWKRTPAGDLAFNQCPLNATGT----------TSR 409  

                   RnCtenGwwerhpsnwpwpnysaCtsney<-*
                   R+ ++ ++ +     w+ p +++C+sney   
   mKIAA0550   410 RCSLSLHGVA----SWEQPSFARCISNEY    434  

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