hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg03041/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0548  ( 1059 res)   mbg03041

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PSI      domain found in Plexins, Semaphorins and Int   141.2    1.1e-37   5
CLECT    C-type lectin (CTL) or carbohydrate-recognit    81.0    1.4e-19   1
EGF_Lam  Laminin-type epidermal growth factor-like do    25.7     0.0063   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PSI        1/5     277   324 ..     1    56 []    37.8  1.5e-06
PSI        2/5     333   378 ..     1    56 []    40.9  1.7e-07
PSI        3/5     385   430 ..     1    56 []    23.1     0.04
CLECT      1/1     418   549 ..     1   141 []    81.0  1.4e-19
PSI        4/5     562   613 ..     1    56 []    34.0    2e-05
PSI        5/5     616   691 ..     1    56 []    37.1  2.3e-06
EGF_Lam    1/2     693   736 ..     1    42 []    31.3  0.00013
EGF_Lam    2/2     739   785 ..     1    42 []     2.6      5.2

Alignments of top-scoring domains:
PSI: domain 1 of 5, from 277 to 324: score 37.8, E = 1.5e-06
                   *->rCsqygvtsCseCllardpygCgWCssegrCtrgerCderrgsrqnw
                       C+++  +s ++C++a+++ +C W++  +rCt++e  +e+++  +++
   mKIAA0548   277    QCDAH--RSEAACVAAGPGIRCLWDTQSSRCTSWELATEEQA--EKL 319  

                   ssgpssqCp<-*
                    s    +C    
   mKIAA0548   320 KS----ECF    324  

PSI: domain 2 of 5, from 333 to 378: score 40.9, E = 1.7e-07
                   *->rCsqygvtsCseCllardpygCgWCssegrCtrg.erCderrgsrqn
                      rC+q+  t+C +C ++ ++  C+WC  + +C+  +++C+e+++s+++
   mKIAA0548   333    RCDQH--TDCYSCTANTND--CHWC--NDHCVPVnHSCTEGQISIAK 373  

                   wssgpssqCp<-*
                   ++     +Cp   
   mKIAA0548   374 YE-----SCP    378  

PSI: domain 3 of 5, from 385 to 430: score 23.1, E = 0.04
                   *->rCsqygvtsCseCllardpygCgWCssegrCtrg..erCderrgsrq
                       C++   tsC +C l ++   C+W ++++ C++++++ C+      +
   mKIAA0548   385    YCNKK--TSCRSCALDQN---CQWEPRNQECIALpeNICG----NGW 422  

                   nwssgpssqCp<-*
                   +++    ++C    
   mKIAA0548   423 HLVG---NSCL    430  

CLECT: domain 1 of 1, from 418 to 549: score 81.0, E = 1.4e-19
                   *->CpstpsgWvsyprpnkyfggkCYkfst....WadAqafCqslgprtg
                      C    +gW+         g++C k+ t ++++++A+ +C++++    
   mKIAA0548   418    C---GNGWHLV-------GNSCLKITTakenYDNAKLSCRNHN---- 450  

                   rvkgghLasIhseeEndFltsl................yWIGLs....g.
                       + Las +s+++ +F++++ +  +++++ ++ + + W+GL++ + + 
   mKIAA0548   451 ----AFLASLTSQKKVEFVLKQlrlmqssqsmskltltPWVGLRkinvSy 496  

                   wqWsDGsgviplaltpvsytnWapgePnnePnnkfrhgnggngdCvvls.
                   w W+D s      + ++s   W p+    eP+        + g C+ ls 
   mKIAA0548   497 WCWEDMS------PFTNSLLQWMPS----EPS--------DAGFCGILSe 528  

                   .....WndvsCtskdpadklpfiCk<-*
                   +++++ + + C +      ++ +C+   
   mKIAA0548   529 pstrgLKAATCIN----PLNGSVCE    549  

PSI: domain 4 of 5, from 562 to 613: score 34.0, E = 2e-05
                   *->rCsqygvtsCseCllardpygCgWCssegrCtrg.........erCd
                      +C+    t C+eC +++    C+WCs+ ++C++++    + + ++C 
   mKIAA0548   562    PCALR--TACGECTSSSSE--CMWCSNMKQCVDSnayvasfpfGQC- 603  

                   errgsrqnwssgpssqCp<-*
                         ++w     s+Cp   
   mKIAA0548   604 ------MEWYT--MSSCP    613  

PSI: domain 5 of 5, from 616 to 691: score 37.1, E = 2.3e-06
                   *->rCsqygvtsCseCllardpygCgWCss.....egrCtrg........
                      +Cs y   +Cs Cl+ +    CgWC+++++++ g+C++g+ +++ + 
   mKIAA0548   616    NCSGY--CTCSHCLEQPG---CGWCTDpsntgKGKCIEGsykgpvkm 657  

                   .................erCderrgsrqnwssgpssqCp<-*
                   +++ + ++  +++  +++ C e+  sr+nws++   +Cp   
   mKIAA0548   658 psqasagnvypqpllnsSMCLED--SRYNWSFI---HCP    691  

EGF_Lam: domain 1 of 2, from 693 to 736: score 31.3, E = 0.00013
                   *->CdCnlpppvG...CdptGqClnCkpnttGGrrCdderCapGyy....
                      C+Cn     G+++C    +C++C + ttG  +C+   C  G+y++++
   mKIAA0548   693    CQCN-----GhskCINQSVCEKCEDLTTG-KHCE--TCISGFYgdpt 731  

                   ...gC<-*
                   +++ C   
   mKIAA0548   732 nggKC    736  

EGF_Lam: domain 2 of 2, from 739 to 785: score 2.6, E = 5.2
                   *->CdCnlpppvG....Cdp.tGqClnCkpnttGGrrCdderCapGyy..
                      C Cn     G+ + C+ +tG C  C    + G+ C    C+     +
   mKIAA0548   739    CKCN-----GhaslCNTnTGKCF-CTTKGVKGDECQ--LCEVENRyq 777  

                   ......gC<-*
                   +++ +++C   
   mKIAA0548   778 gnplkgTC    785  

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