hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg03041/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0548 ( 1059 res) mbg03041 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PSI Plexin repeat 143.7 3.2e-39 5 Kelch_1 Kelch motif 82.8 7.1e-21 4 Kelch_2 Kelch motif 47.9 2.3e-10 4 Laminin_EGF Laminin EGF-like (Domains III and V) 34.1 3.2e-06 2 Lectin_C Lectin C-type domain 13.1 0.00026 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Kelch_1 1/4 21 68 .. 1 45 [] 24.5 0.0026 Kelch_2 1/4 21 68 .. 1 54 [] 17.2 0.4 Kelch_1 2/4 129 181 .. 1 45 [] 17.6 0.27 Kelch_2 2/4 129 181 .. 1 54 [] 0.9 1.9e+02 Kelch_1 3/4 183 237 .. 1 45 [] 23.8 0.004 Kelch_2 3/4 183 237 .. 1 54 [] 21.0 0.028 Kelch_2 4/4 243 280 .. 1 54 [] 9.0 17 Kelch_1 4/4 243 288 .. 1 45 [] 18.1 0.2 PSI 1/5 277 324 .. 1 63 [] 22.7 0.0032 PSI 2/5 333 378 .. 1 63 [] 42.0 1.3e-08 PSI 3/5 385 430 .. 1 63 [] 7.0 0.19 Lectin_C 1/1 435 550 .. 1 125 [] 13.1 0.00026 PSI 4/5 562 613 .. 1 63 [] 57.7 2.6e-13 PSI 5/5 616 691 .. 1 63 [] 45.5 1.2e-09 Laminin_EGF 1/2 693 736 .. 1 59 [] 34.1 3.2e-06 Laminin_EGF 2/2 739 785 .. 1 59 [] 8.4 0.021 Alignments of top-scoring domains: Kelch_1: domain 1 of 4, from 21 to 68: score 24.5, E = 0.0026 *->pRsgagvvvldgkiYviGGydg...qslnsvevYDpetntWtklpsm R+g++ + +++kiY GG +++++ +n v++ + +W l++ mKIAA0548 21 VRYGHSLALHKDKIYMYGGKIDstgNVTNELRVFHIHNESWVLLTPK 67 p<-* mKIAA0548 68 A 68 Kelch_2: domain 1 of 4, from 21 to 68: score 17.2, E = 0.4 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW ry+h++++ +k+y++GG + + +++ l+v++ ++W mKIAA0548 21 VRYGHSLALHKDKIYMYGGK------IDSTGNVTNELRVFHIHNESW 61 eklpalp<-* l++ mKIAA0548 62 VLLTPKA 68 Kelch_1: domain 2 of 4, from 129 to 181: score 17.6, E = 0.27 *->pRsgagvvvldgk..iYviGGydg......qslnsvevYDpetntWt +g+++v+ d + +Yv GGy + ++ + ++ ++YD++t+ Wt mKIAA0548 129 GGYGHSSVYDDRTkaLYVHGGYKAfsankyRLADDLYRYDVDTQMWT 175 klpsmp<-* +l + + mKIAA0548 176 ILKDSR 181 Kelch_2: domain 2 of 4, from 129 to 181: score 0.9, E = 1.9e+02 *->pryphasvvp..ggklyvvGGsfkgnrgtgngdesssdllvldpetn + y+h+sv ++ lyv GG+ + ++ n+ + +dl+++d +t+ mKIAA0548 129 GGYGHSSVYDdrTKALYVHGGY---KAFSANKYRLADDLYRYDVDTQ 172 vWeklpalp<-* W+ l++ mKIAA0548 173 MWTILKDSR 181 Kelch_1: domain 3 of 4, from 183 to 237: score 23.8, E = 0.004 *->pRsgagvvvldgkiYviGGydg..........qslnsvevYDpetnt R+ +++v + g + v+GG + ++++ +++ + +++++ +YD ++ mKIAA0548 183 FRYLHTAVIVSGTMLVFGGNTHndtsmshgakCFSSDFMAYDIACDR 229 Wtklpsmp<-* W+ lp + mKIAA0548 230 WSVLPRPE 237 Kelch_2: domain 3 of 4, from 183 to 237: score 21.0, E = 0.028 *->pryphasvvpggklyvvGGs.fkgnrgtgngdesssdllvldpetnv +ry h++v + g ++v+GG + ++ +++ ++ssd++ +d + mKIAA0548 183 FRYLHTAVIVSGTMLVFGGNtHNDTSMSHGAKCFSSDFMAYDIACDR 229 Weklpalp<-* W+ lp++ mKIAA0548 230 WSVLPRPE 237 Kelch_2: domain 4 of 4, from 243 to 280: score 9.0, E = 17 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r +h++v++++ +yv+GG+ +++++sd+ v+ mKIAA0548 243 NRFGHSAVLYNSTMYVFGGF---------NSLLLSDV-------LVF 273 eklpalp<-* + +++ mKIAA0548 274 TLEQCDA 280 Kelch_1: domain 4 of 4, from 243 to 288: score 18.1, E = 0.2 *->pRsgagvvvldgkiYviGGydgqslnsvevYDpe.tntWtklpsmp< R g+++v ++ +Yv+GG+++ l++v v+ +e+ + + + mKIAA0548 243 NRFGHSAVLYNSTMYVFGGFNSLLLSDVLVFTLEqCDAHRSEAACV 288 -* mKIAA0548 - - PSI: domain 1 of 5, from 277 to 324: score 22.7, E = 0.0032 *->nCsqytsCssCLaardpfyCgWCssegrCtrgsaytsfyGeCprae. C +++s ++C+aa + +C W+ + +rCt+++ ++ + mKIAA0548 277 QCDAHRSEAACVAAGPGIRCLWDTQSSRCTSWE-------LATEEQa 316 pendqwldwswssskCp<-* + s C mKIAA0548 317 EK---------LKSECF 324 PSI: domain 2 of 5, from 333 to 378: score 42.0, E = 1.3e-08 *->nCsqytsCssCLaardpfyCgWCssegrCtrgsaytsfyGeCpraep +C q+t+C sC+a+ C+WC++ +C++ ++ C++++ mKIAA0548 333 RCDQHTDCYSCTANTN--DCHWCND--HCVPVNH------SCTEGQ- 368 endqwldwswssskCp<-* ++ +++ Cp mKIAA0548 369 ------ISIAKYESCP 378 PSI: domain 3 of 5, from 385 to 430: score 7.0, E = 0.19 *->nCsqytsCssCLaardpfyCgWCssegrCtrgsaytsfyGeCprae. C tsC sC + + +C+W ++++ C+ + C ++++ mKIAA0548 385 YCNKKTSCRSCALDQ---NCQWEPRNQECIALPEN-----ICGNGWh 423 pendqwldwswssskCp<-* ++ C mKIAA0548 424 L----------VGNSCL 430 Lectin_C: domain 1 of 1, from 435 to 550: score 13.1, E = 0.00026 *->esktWaeAelaCqkegghAHLvsIqsaeEqsfvvafltsltkk.... + +++ A+l C+++++ L+s s+ +f+ + + +++ mKIAA0548 435 AKENYDNAKLSCRNHNAF--LASLTSQKKV----EFVLKQLRLmqss 475 .....sntyaWIGLtdintegtwvwegwetdgspvnyt.enWapgePnnr ++ ++ W+GL++in++ +w w d+sp +++ W p eP++ mKIAA0548 476 qsmskLTLTPWVGLRKINVS-YWCW----EDMSPFTNSlLQWMPSEPSD- 519 gnhGgnEdCveiytdtdflaGkWnDepCdskl.pyvCef<-* ++C+ ++ + ++ C +l++ vCe+ mKIAA0548 520 -----AGFCGILSEPST---RGLKAATCINPLnGSVCER 550 PSI: domain 4 of 5, from 562 to 613: score 57.7, E = 2.6e-13 *->nCsqytsCssCLaardpfyCgWCssegrCtrgsayt.sf.yGeCpra +C+ +t C++C++++ +C+WCs++++C+ +ay+ sf++G+C ++ mKIAA0548 562 PCALRTACGECTSSSS--ECMWCSNMKQCVDSNAYVaSFpFGQCMEW 606 ependqwldwswssskCp<-* + s Cp mKIAA0548 607 Y-----------TMSSCP 613 PSI: domain 5 of 5, from 616 to 691: score 45.5, E = 1.2e-09 *->nCsqytsCssCLaardpfyCgWCss.....egrCtrgsayt.s.... nCs+y +Cs+CL+ + +CgWC ++++++ g+C+ gs +++ + ++ mKIAA0548 616 NCSGYCTCSHCLEQP---GCGWCTDpsntgKGKCIEGSYKGpVkmps 659 ............f.yGeCprae.pendqwldwswssskCp<-* + + ++ +++ +++ +C ++++++ ws+ +Cp mKIAA0548 660 qasagnvypqplLnSSMCLEDSrYN--------WSFIHCP 691 Laminin_EGF: domain 1 of 2, from 693 to 736: score 34.1, E = 3.2e-06 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy C+Cn+h+ C + +C kC + +tG++C+ C G+ mKIAA0548 693 CQCNGHS-----KCIN--------QSVCEKCEDLTTGKHCETCISGF 726 yglpsgdpgqgC<-* yg+p+ + g C mKIAA0548 727 YGDPT-NGG-KC 736 Laminin_EGF: domain 2 of 2, from 739 to 785: score 8.4, E = 0.021 *->CdCnphGslsddtCdsddelfgeetGqClkCkp.nvtGrrCdrC..k C Cn+h+ + C+ +tG C C ++v G+ C C+ + mKIAA0548 739 CKCNGHA----SLCNT-------NTGKCF-CTTkGVKGDECQLCevE 773 pGyyglpsgdpgqgC<-* y g+ + C mKIAA0548 774 NRYQGN---PLKGTC 785 //