hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm03375/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0545  ( 886 res)   mpm03375

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PDZ      Domain present in PSD-95, Dlg, and ZO-1/2.      43.2    3.4e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PDZ        1/1      93   159 ..     1    80 []    43.2  3.4e-08

Alignments of top-scoring domains:
PDZ: domain 1 of 1, from 93 to 159: score 43.2, E = 3.4e-08
                   *->gglGfsivggifvssvvpGspAakaGrkslglLkvGDvIleVNGets
                      g+lGf ++    v++v++ + A++aG      L+ G +++e+   + 
   mKIAA0545    93    GQLGFHVKYDGTVAEVEDYGFAWQAG------LRQGSRLVEICK-VA 132  

                   vegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   v +l+h++ +dll+ +       +v+++++++    
   mKIAA0545   133 VVTLSHDQMIDLLRTSV------TVKVVIIPPF    159  

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