hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm03375/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0545  ( 886 res)   mpm03375

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PDZ      PDZ domain (Also known as DHR or GLGF)          25.2     0.0016   1
DUF904   Protein of unknown function (DUF904)            -7.3       0.93   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PDZ        1/1      84   156 ..     1    82 []    25.2   0.0016
DUF904     1/1     811   882 ..     1    88 []    -7.3     0.93

Alignments of top-scoring domains:
PDZ: domain 1 of 1, from 84 to 156: score 25.2, E = 0.0016
                   *->evtlekevkrgglGfsikggsdkgivvsevlpGsgaAeagGrLkeGD
                      ++tl ++ + g lGf +k        v+ev    g A ++G L+ G 
   mKIAA0545    84    DMTLRRN-GLGQLGFHVKY----DGTVAEVEDY-GFAWQAG-LRQGS 123  

                   qIlsvNGqdvenlsheravlalkgsggsevtLtil<-*
                   ++++++ + v+ lsh++ +++l+ s+  +v+++i+   
   mKIAA0545   124 RLVEICKVAVVTLSHDQMIDLLRTSV--TVKVVII    156  

DUF904: domain 1 of 1, from 811 to 882: score -7.3, E = 0.93
                   *->MslEvlskLEeKiqqAiDTItL.LQmEieELKekNeelkkennells
                      Ms E    L  K+ q ++  +++L   +  +K+++  l+ e+     
   mKIAA0545   811    MSEESPLDLTGKVYQ-LEVMLKqLHTDLQKEKQDKVVLQSEVA---- 852  

                   erekLeeeNnqLkqeheiAlnIeNrEkWqerLrgLLgKlnev<-*
                       L++ N+ L++e +          + e Lr+  +++ ++   
   mKIAA0545   853 ---SLRQNNQRLQEESQA---------ASEQLRKFAELFSRE    882  

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