hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mph/mph00383/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0544 ( 455 res) mph00383 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- RING Ring finger 28.1 0.0012 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- RING 1/1 177 215 .. 1 23 [] 28.1 0.0012 Alignments of top-scoring domains: RING: domain 1 of 1, from 177 to 215: score 28.1, E = 0.0012 *->CpICle....pvvlpCgH..FCr.Ci.........CPlC<-* C +Cl++ +++ +lpC H C +C ++ + + ++CP+C mKIAA0544 177 CVVCLSdlrdTLILPCRHlcLCTsCAdtlryqannCPIC 215 //