hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph00383/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0544  ( 455 res)   mph00383

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C3HC4 Zinc finger, C3HC4 type (RING finger)           20.9      0.007   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C3HC4   1/1     177   215 ..     1    50 []    20.9    0.007

Alignments of top-scoring domains:
zf-C3HC4: domain 1 of 1, from 177 to 215: score 20.9, E = 0.007
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C +Cl  l +       ilpC+H     + C sC  +       ++C
   mKIAA0544   177    CVVCLSDLRDTL-----ILPCRHL----CLCTSCADTLRY--QANNC 212  

                   plC<-*
                   p+C   
   mKIAA0544   213 PIC    215  

//