hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpf/mpf00666/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0543  ( 937 res)   mpf00666

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
KRAB     KRAB box                                        73.0    6.2e-18   1
hATC     hAT family dimerisation domain                   2.9        0.1   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
KRAB       1/1     238   278 ..     1    41 []    73.0  6.2e-18
hATC       1/1     786   869 ..     1    94 []     2.9      0.1

Alignments of top-scoring domains:
KRAB: domain 1 of 1, from 238 to 278: score 73.0, E = 6.2e-18
                   *->VtFeDVAVdFtqEEWglLdpaQrnLYrdVMlENyrnLvSlg<-*
                       tFeD AV+F++EEW lLd  Q++LYrd M+  y+ L+Sl+   
   mKIAA0543   238    ATFEDLAVYFSREEWSLLDKQQKELYRDGMQMSYELLASLE    278  

hATC: domain 1 of 1, from 786 to 869: score 2.9, E = 0.1
                   *->ELdkYlselpvlprnteprgledfdvLeWWkeaqnssryPiLsklAr
                       L ++ s  +   +n        f  L+    +  + r+P+L ++  
   mKIAA0543   786    LLKEWQSL-KAATQNL------LFSMLCKCA-LTQHCRFPLLRRFVV 824  

                   diLsiPvssaasErsFStgklgrvldesrnrlepenveaLlcledwl<-*
                    + s+P+s+  + r F ++   ++ +e r++l  e ++ L+ +  +    
   mKIAA0543   825 VVVSVPISTSCCARGFKAM--SKIRTEERTKLSNEVLDTLMMTAVNG    869  

//