hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg05681/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0541  ( 1166 res)   mbg05681

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD40 repeats                                    98.7    6.7e-25   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/4     162   207 ..     1    46 []    32.3  6.5e-05
WD40       2/4     210   255 ..     1    46 []     5.2       74
WD40       3/4     258   297 ..     1    46 []    30.2  0.00028
WD40       4/4    1059  1099 ..     1    46 []    36.1  4.8e-06

Alignments of top-scoring domains:
WD40: domain 1 of 4, from 162 to 207: score 32.3, E = 6.5e-05
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       + + rtl+gH++   Vt++ + +  +++++ ++l+sg+ D ++ +W
   mKIAA0541   162    GwPPHRTLRGHRN--KVTCLLYPHQVSARYDQRYLISGGvDFSVIIW 206  

                   d<-*
                   d   
   mKIAA0541   207 D    207  

WD40: domain 2 of 4, from 210 to 255: score 5.2, E = 74
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +++  +++  H g  ++t + + p + s    ++++s  +D+++ l 
   mKIAA0541   210    SgEMKHIFCVHGG--EITQLLVPPENCSARVQHCICSVAsDHSVGLL 254  

                   d<-*
                   +   
   mKIAA0541   255 S    255  

WD40: domain 3 of 4, from 258 to 297: score 30.2, E = 0.00028
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++k+++  + H    p+  +++ p++      ++l++g++Dg++++W
   mKIAA0541   258    EkKCIMLASRHLF--PIQVIKWRPSD------DYLVVGCtDGSVYVW 296  

                   d<-*
                       
   mKIAA0541   297 Q    297  

WD40: domain 4 of 4, from 1059 to 1099: score 36.1, E = 4.8e-06
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs..Dgtirl
                       +  ++t++gH+g  p+t+v+f pdg      ++la+ s++D++i +
   mKIAA0541  1059    RtGKCQTIHGHKG--PITAVSFAPDG------RYLATYSntDSHISF 1097 

                   Wd<-*
                   W    
   mKIAA0541  1098 WQ    1099 

//