hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg05681/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0541  ( 1166 res)   mbg05681

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD domain, G-beta repeat                        73.3    5.1e-18   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/4     164   207 ..     1    38 []    30.2  4.6e-05
WD40       2/4     212   255 ..     1    38 []     6.9       29
WD40       3/4     260   297 ..     1    38 []    26.4  0.00068
WD40       4/4    1061  1099 ..     1    38 []    15.7      1.1

Alignments of top-scoring domains:
WD40: domain 1 of 4, from 164 to 207: score 30.2, E = 4.6e-05
                   *->eclavl.gHtspVtcvafspd.....sgpllasgSrDgtikiWd<-*
                       + ++l+gH + Vtc+ + +  ++  ++++l+sg+ D ++ iWd   
   mKIAA0541   164    PPHRTLrGHRNKVTCLLYPHQvsaryDQRYLISGGVDFSVIIWD    207  

WD40: domain 2 of 4, from 212 to 255: score 6.9, E = 29
                   *->eclavl.gHtspVtcvafspd.....sgpllasgSrDgtikiWd<-*
                      e ++++  H + +t + + p++ ++  +++++s  +D+++ + +   
   mKIAA0541   212    EMKHIFcVHGGEITQLLVPPEncsarVQHCICSVASDHSVGLLS    255  

WD40: domain 3 of 4, from 260 to 297: score 26.4, E = 0.00068
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      +c+   + H  p+  +++ p+   +l+ g+ Dg++++W    
   mKIAA0541   260    KCIMLAsRHLFPIQVIKWRPS-DDYLVVGCTDGSVYVWQ    297  

WD40: domain 4 of 4, from 1061 to 1099: score 15.7, E = 1.1
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                         ++++gH++p+t+v+f+pd++ l   +  D +i  W    
   mKIAA0541  1061    GKCQTIhGHKGPITAVSFAPDGRYLATYSNTDSHISFWQ    1099 

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