hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg09815/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0540  ( 1539 res)   mbg09815

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD40 repeats                                    72.8    4.2e-17   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/3    1228  1273 ..     1    46 []     9.1       18
WD40       2/3    1276  1315 ..     1    46 []    31.6  0.00011
WD40       3/3    1327  1366 ..     1    46 []    34.2  1.8e-05

Alignments of top-scoring domains:
WD40: domain 1 of 3, from 1228 to 1273: score 9.1, E = 18
                   *->t.kllrtlk....gHtgespVtsvafspdggssdspnllasgs..Dg
                      ++k+ + l+++    +g  +  ++a+ pdg      +ll+sg+++Dg
   mKIAA0540  1228    SpKVQKLLSgpwvSDSG-VSAQALAVAPDG------KLLFSGGhwDG 1267 

                   tirlWd<-*
                   ++r+ +   
   mKIAA0540  1268 SLRVTS    1273 

WD40: domain 2 of 3, from 1276 to 1315: score 31.6, E = 0.00011
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       ++ll  l+ H +   Vt++a +  g       +l+sgs+D t+ +W
   mKIAA0540  1276    RgRLLNQLSRHLD--IVTCLALDTCG------IYLISGSrDTTCMVW 1314 

                   d<-*
                       
   mKIAA0540  1315 R    1315 

WD40: domain 3 of 3, from 1327 to 1366: score 34.2, E = 1.8e-05
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +k++++l gH +  +V++va+s         ++ +sgs+Dgt+ + 
   mKIAA0540  1327    ApKPVQVLYGHVA--AVSCVAISTEL------DMAVSGSeDGTVIIH 1365 

                   d<-*
                       
   mKIAA0540  1366 T    1366 

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