hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg09815/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0540  ( 1539 res)   mbg09815

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Beach    Beige/BEACH domain                             624.9   4.7e-184   1
WD40     WD domain, G-beta repeat                        61.0    2.5e-14   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Beach      1/1     850  1130 ..     1   287 []   624.9 4.7e-184
WD40       1/2    1278  1315 ..     1    38 []    29.4  8.1e-05
WD40       2/2    1329  1366 ..     1    38 []    32.0  1.4e-05

Alignments of top-scoring domains:
Beach: domain 1 of 1, from 850 to 1130: score 624.9, E = 4.7e-184
                   *->TkRWqrGeISNFeYLmhLNtlAGRsyNDLsQYPVFPWIlADYtSesL
                      T++W+ +eISNFeYLm+LNt+AGR+yNDLsQYPVFPW+l DY+S++L
   mKIAA0540   850    TQKWVQREISNFEYLMQLNTIAGRTYNDLSQYPVFPWVLQDYVSPVL 896  

                   DLsnPstFRdLSKPiGAQspeReeqFleRYesledpeekevppFHYGtHY
                   DLsnP++FRdLSKPiG+ +p+ +   +e Yes+edp  + + +FHYGtHY
   mKIAA0540   897 DLSNPAVFRDLSKPIGVVNPKHAQLVREKYESFEDPA-GTIDKFHYGTHY 945  

                   SSagiVlfYLiRlePFteefLaLQgGkFDhADRlFhSieetWrsaslenm
                   S+a+ V +YLiR+ePFt+   +LQ G+FD  DR FhS++ +W    le+ 
   mKIAA0540   946 SNAAGVMHYLIRVEPFTSLHVQLQSGRFDCSDRQFHSVAAAWQA-RLESP 994  

                   tDVKELIPEFFyLPEfLvNrngfDlGvrQn.GekVnDVdLPPWAkgDEKA
                   +DVKELIPEFFy P fL+N ngfDlG  Q + ekV+DV+LPPWA      
   mKIAA0540   995 ADVKELIPEFFYFPDFLENQNGFDLGCLQLtNEKVGDVVLPPWAG----- 1039 

                   dPeeFiqkhReALESdYVSahLHeWIDLIFGYKQrGkeAvkAiNVFhhlt
                   +Pe+FiqkhR+ALES+YVS hLHeWIDLIFGYKQrG++A+ A+NVF++ t
   mKIAA0540  1040 SPEDFIQKHRQALESEYVSTHLHEWIDLIFGYKQRGPAAEEALNVFYYCT 1089 

                   YeGaVDldsieDPverrAieaqIknFGQTPkQLFtkPHPkR<-*
                   YeGaVDld + D+ er A+e++I nFGQTP QL+++PHP+R   
   mKIAA0540  1090 YEGAVDLDHVADERERKALEGIISNFGQTPCQLLKEPHPPR    1130 

WD40: domain 1 of 2, from 1278 to 1315: score 29.4, E = 8.1e-05
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                       +l  l+ H + Vtc+a +   g +l+sgSrD t+ +W    
   mKIAA0540  1278    RLLNQLsRHLDIVTCLALDTC-GIYLISGSRDTTCMVWR    1315 

WD40: domain 2 of 2, from 1329 to 1366: score 32.0, E = 1.4e-05
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      ++++vl+gH ++V+cva+s +   + +sgS+Dgt+ i     
   mKIAA0540  1329    KPVQVLyGHVAAVSCVAISTE-LDMAVSGSEDGTVIIHT    1366 

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