hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg03667/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0535  ( 1049 res)   mbg03667

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2HC  Zinc finger, C2HC type                         362.5   4.5e-105   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C2HC    1/6     367   397 ..     1    31 []    62.3    1e-14
zf-C2HC    2/6     411   441 ..     1    31 []    67.1  3.8e-16
zf-C2HC    3/6     723   753 ..     1    31 []    70.7  3.1e-17
zf-C2HC    4/6     767   797 ..     1    31 []    74.5  2.2e-18
zf-C2HC    5/6     815   845 ..     1    31 []    67.5  2.8e-16
zf-C2HC    6/6     868   898 ..     1    31 []    59.8  5.8e-14

Alignments of top-scoring domains:
zf-C2HC: domain 1 of 6, from 367 to 397: score 62.3, E = 1e-14
                   *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-*
                      e kCP+pGCdG+GHvtG y +HrslsGCP++   
   mKIAA0535   367    EAKCPIPGCDGTGHVTGLYPHHRSLSGCPHK    397  

zf-C2HC: domain 2 of 6, from 411 to 441: score 67.1, E = 3.8e-16
                   *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-*
                      +lkCPtpGC+G+GHv++++++HrslsGCP+a   
   mKIAA0535   411    VLKCPTPGCTGRGHVNSNRNTHRSLSGCPIA    441  

zf-C2HC: domain 3 of 6, from 723 to 753: score 70.7, E = 3.1e-17
                   *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-*
                      +++CPtpGCdGsGHvtG+y+sHrs+sGCPla   
   mKIAA0535   723    LITCPTPGCDGSGHVTGNYASHRSVSGCPLA    753  

zf-C2HC: domain 4 of 6, from 767 to 797: score 74.5, E = 2.2e-18
                   *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-*
                      elkCPtpGCdGsGHvtG+y+sHrslsGCP+a   
   mKIAA0535   767    ELKCPTPGCDGSGHVTGNYASHRSLSGCPRA    797  

zf-C2HC: domain 5 of 6, from 815 to 845: score 67.5, E = 2.8e-16
                   *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-*
                      el+CP+ GCdG+GH++GkytsHr++sGCPla   
   mKIAA0535   815    ELRCPVIGCDGQGHISGKYTSHRTASGCPLA    845  

zf-C2HC: domain 6 of 6, from 868 to 898: score 59.8, E = 5.8e-14
                   *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-*
                      +++CP+pGC+G+GHv++ + +HrslsGCPl+   
   mKIAA0535   868    LPHCPLPGCNGLGHVNNVFVTHRSLSGCPLN    898  

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