hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mpf/mpf00179/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0534 ( 1444 res) mpf00179 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PSI domain found in Plexins, Semaphorins and Int 109.8 3e-28 5 CLECT C-type lectin (CTL) or carbohydrate-recognit 82.2 6.3e-20 1 CUB Domain first found in C1r, C1s, uEGF, and bo 53.3 3.3e-11 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- CUB 1/1 158 274 .. 1 144 [] 53.3 3.3e-11 PSI 1/5 679 722 .. 1 56 [] 19.1 0.51 PSI 2/5 731 774 .. 1 56 [] 26.5 0.0037 PSI 3/5 780 825 .. 1 56 [] 23.3 0.033 CLECT 1/1 813 938 .. 1 141 [] 82.2 6.3e-20 PSI 4/5 954 1004 .. 1 56 [] 31.5 0.00011 PSI 5/5 1007 1077 .. 1 56 [] 40.4 2.5e-07 Alignments of top-scoring domains: CUB: domain 1 of 1, from 158 to 274: score 53.3, E = 3.3e-11 *->CGgtltasssDfkesGtit..SPnYPnspsgesYpnnleCvWtIsap C g++++++ +sG++t++ nY ++ ++C+W+I+ mKIAA0534 158 CQGRFKLTE----PSGYLTdgPINYKYK---------TKCTWLIEGY 191 pGyrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspl p+ +++L+F + F +E+s +D+ +yDG+s ++pl mKIAA0534 192 PNAVLRLRFNH---FATECS-------------WDHMYVYDGDS-IYAPL 224 lGntearfCGse..........p.iisSssNsmtvtFvsDssvqgkgktk ++ ++G + ++ +++++ p+++++ s ++++F+sD + mKIAA0534 225 VA----VLSGLIvpevrgnetvPeVVTT-SGYALLHFFSDAAYN-----L 264 rGFsarYsav<-* +GF++ Ys++ mKIAA0534 265 TGFNIFYSIN 274 PSI: domain 1 of 5, from 679 to 722: score 19.1, E = 0.51 *->rCsqygvtsCseCllardpygCgWCssegrCtrg.erCderrgsrqn +C ++ ++ + C a+++ +C W ++C ++++ + n mKIAA0534 679 NCKAF--RDEELCRNAGPGIKCVWN--KNHCESWeSGNT------NN 715 wssgpssqCp<-* +++ +Cp mKIAA0534 716 ILR---AKCP 722 PSI: domain 2 of 5, from 731 to 774: score 26.5, E = 0.0037 *->rCsqygvtsCseCllardpygCgWCssegrCtrg.erCderrgsrqn rC +y +C++C ++ ++ C+WC +++C+++++ C+ s+ n mKIAA0534 731 RCYRY--ADCASCTANTNG--CQWCD-DKKCISAsSNCST---SVRN 769 wssgpssqCp<-* ++ +C+ mKIAA0534 770 YT-----KCH 774 PSI: domain 3 of 5, from 780 to 825: score 23.3, E = 0.033 *->rCsqygvtsCseCllardpygCgWCssegrCtrg..erCderrgsrq C+++ tsC +C l+ + C+W+ +++ C++++ + C+ + mKIAA0534 780 ICNKL--TSCKSCSLNLN---CQWDQRQQECQALpaHLCG------E 815 nwssgpssqCp<-* w + ++ C mKIAA0534 816 GWNH-VGDACL 825 CLECT: domain 1 of 1, from 813 to 938: score 82.2, E = 6.3e-20 *->CpstpsgWvsyprpnkyfggkCYkfst....WadAqafCqslgprtg C +gW++ g+ C +++++++++++A+ +C +l mKIAA0534 813 C---GEGWNHV-------GDACLRINSsresYDNAKLYCYNLS---- 845 rvkgghLasIhseeEndFltsl..........yWIGLs....g.wqWsDG g+Las ++++E +F++ ++ ++++ + W+GL++ + + w W+D mKIAA0534 846 ----GNLASLTTSKEVEFVLDEiqkftqqkvsPWVGLRkiniSyWGWEDM 891 sgviplaltpvsytnWapgePnnePnnkfrhgnggngdCvvls......W s + +++ W pg ePn ++g C++l + + mKIAA0534 892 S------PFTNTSLQWLPG----EPN--------DSGFCAYLEraavagL 923 ndvsCtskdpadklpfiCk<-* + +Cts + + +C+ mKIAA0534 924 KANPCTS----MADGLVCE 938 PSI: domain 4 of 5, from 954 to 1004: score 31.5, E = 0.00011 *->rCsqygvtsCseCllardpygCgWCssegrCtrg.........erCd +Cs tsC+ C +++ C+WCss++rC++++ + + ++C mKIAA0534 954 PCSLR--TSCANCTSSGME--CMWCSSTKRCVDSnayiisfpyGQCL 996 errgsrqnwssgpssqCp<-* e w +C+ mKIAA0534 997 E-------WQT---ATCS 1004 PSI: domain 5 of 5, from 1007 to 1077: score 40.4, E = 2.5e-07 *->rCsqygvtsCseCllardpygCgWCss.....egrCtrg........ +Cs + ++C++Cl+ + CgWC +++++++g C++g+++++ + mKIAA0534 1007 NCSGL--RTCGQCLEQPG---CGWCNDpsntgRGYCIEGssrgpmkl 1048 ............erCderrgsrqnwssgpssqCp<-* + ++++ +++ C+++++ ++ws++ qCp mKIAA0534 1049 vgvhnsdvvldtSLCPKEKN--YEWSFI---QCP 1077 //