hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mpf/mpf00729/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA0533 ( 1702 res) mpf00729 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- LamG Laminin G domain 371.6 4.9e-107 5 EGF_Lam Laminin-type epidermal growth factor-like do 109.3 4.5e-28 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- EGF_Lam 1/5 60 104 .. 1 42 [] 4.6 3.6 EGF_Lam 2/5 107 154 .. 1 42 [] 52.8 4.4e-11 EGF_Lam 3/5 157 195 .. 1 42 [] 6.6 2.5 EGF_Lam 4/5 198 242 .. 1 42 [] 54.1 1.8e-11 EGF_Lam 5/5 245 292 .. 1 42 [] 24.4 0.016 LamG 1/5 771 923 .. 1 137 [] 42.2 6.8e-08 LamG 2/5 977 1114 .. 1 137 [] 49.9 3.2e-10 LamG 3/5 1160 1285 .. 1 137 [] 83.9 1.9e-20 LamG 4/5 1370 1508 .. 1 137 [] 92.6 4.7e-23 LamG 5/5 1550 1681 .. 1 137 [] 102.4 5.4e-26 Alignments of top-scoring domains: EGF_Lam: domain 1 of 5, from 60 to 104: score 4.6, E = 3.6 *->CdCnlpppvG...Cdp.tGqClnCkpnttGGrrCdderCapGyy... + +G+++ ++ C C n+ G + C +CapGyy+++ mKIAA0533 60 ---S---EAGrgpPASnVELCM-CPANYRG-DSCQ--ECAPGYYrdt 96 ......gC<-* ++ + C mKIAA0533 97 kglflgRC 104 EGF_Lam: domain 2 of 5, from 107 to 154: score 52.8, E = 4.4e-11 *->CdCnlpppvG....Cdp.tGqClnCkpnttGGrrCdderCapGyy.. C+C+ G++++C p++G C+ C++nt+G ++C+ rC+pG+ ++ mKIAA0533 107 CQCH-----GhsdrCLPgSGICVGCQHNTEG-DQCE--RCRPGFVss 145 .......gC<-* +++++ + C mKIAA0533 146 dpsnpasPC 154 EGF_Lam: domain 3 of 5, from 157 to 195: score 6.6, E = 2.5 *->CdCnl.pppvG....Cdp.tGqClnCkpnttGGrrCdderCapGyyg C+C+l +p+ + ++C ++G+C+ C ++++G ++C g mKIAA0533 157 CPCPLaVPSNNfadgCVLrNGRCDRCLEGYFGFEQCQ---------G 194 C<-* C mKIAA0533 195 C 195 EGF_Lam: domain 4 of 5, from 198 to 242: score 54.1, E = 1.8e-11 *->CdCnlpppvG....Cdp.tGqClnCkpnttGGrrCdderCapGyy.. C C p+ ++++C+p++GqC+ C+p+ttG ++C +CapGy++ mKIAA0533 198 CACG---PAAkgseCHPqSGQCH-CQPGTTG-PQCL--ECAPGYWgl 237 ...gC<-* +++gC mKIAA0533 238 pekGC 242 EGF_Lam: domain 5 of 5, from 245 to 292: score 24.4, E = 0.016 *->CdCnlpppvG.Cdp.tGqClnCkpnttGGrrCdderCapGyy..... C+C+ +G+Cdp+tG+C C p+ G +rCd C + + ++ mKIAA0533 245 CQCP----RGhCDPhTGHCT-CPPGLSG-ERCD--TCSQQHQvpvpg 283 .......gC<-* ++++++ +C mKIAA0533 284 kpgghgiHC 292 LamG: domain 1 of 5, from 771 to 923: score 42.2, E = 6.8e-08 *->t.lsisfsFrTtspn.........GlLlyag....ggdflaleLvlE + + f+++ p +++++++++ + ly+g+++ +gd++ ++L+ mKIAA0533 771 AyTALKFHIQSPVPApepgkntgdHFVLYMGsrqaTGDYMGVSLR-- 815 DsdgdGrlvlrydlGssttggparltsdsdrptplnDGqWHrVsverngr + +++ +y+lG +gp++l+ d q+ Vs+ r+ + mKIAA0533 816 ----NQKVHWVYRLGK---AGPTTLSID-----ENIGEQFAAVSIDRTLQ 853 svtLsVDggnpvsges...........t.LdldkeesgplylGGlPe... +++sV + + + ++++ ++++ L+l++ ++ +y+GG P++ + mKIAA0533 854 FGHMSVT-VEKQMVHEikgdtvapgseGlLNLHP-DDFVFYVGGYPSnft 901 ...lpvspgFrGCirnlrvngk<-* +++ + pg+ GCi+ ++n++ mKIAA0533 902 ppePLRFPGYLGCIEMETLNEE 923 LamG: domain 2 of 5, from 977 to 1114: score 49.9, E = 3.2e-10 *->t.lsisfsFrTtspnGlLlyag.ggdflaleLvlEDsdgdGrlvlry ++ ++ ++r s nG+++++ + ++fl+l+++ +G+lvl y mKIAA0533 977 NtKRFDQELRLVSYNGIIFFLKqESQFLCLAVQ------EGTLVLFY 1017 dlGssttggparltsdsdrptplnDGqWHrVsvern...grsvtLsVDgg d+Gs g ++ + + p + ++v +++++v + V mKIAA0533 1018 DFGS----GLKKADPLQ--PPQALTAASKAIQVFLLagnRKRVLVRVE-R 1060 npvsges..t.LdldkeesgplylGGlPe..........lpvspgFrGCi ++v + ++ L++ + +ylGG+P+++ + + ++ p+ + rGCi mKIAA0533 1061 ATVFSVDqdNmLEMA----DAYYLGGVPPeqlplslrqlFPSGGSVRGCI 1106 rnlrvngk<-* ++++ gk mKIAA0533 1107 KGIKALGK 1114 LamG: domain 3 of 5, from 1160 to 1285: score 83.9, E = 1.9e-20 *->t.lsisfsFrTtspnGlLlyag.ggdflaleLvlEDsdgdGrlvlry + f Fr t++n lL y ++++ ++++L+ +G+++lr+ mKIAA0533 1160 EvVYSGFGFRGTQDNNLLYYRTsPDGPYQVSLR------EGHVTLRF 1200 dlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDggnpv + +++++ + ++DG +H V+++ n + v L+VD++++ mKIAA0533 1201 MNQ--------EVETQ----RVFADGAPHYVAFYSNVTGVWLYVDDQLQL 1238 sges....t.LdldkeesgplylGGlPelpvspgFrGCirnlrvngk<-* + + +++++ L+l++ee+++l lGGlP + + ++F+GCi+n++v++ mKIAA0533 1239 VKSHerttPmLQLQPEEPSRLLLGGLPVSGTFHNFSGCISNVFVQRL 1285 LamG: domain 4 of 5, from 1370 to 1508: score 92.6, E = 4.7e-23 *->t.lsisfsFrTtspn.GlLlyag....ggdflaleLvlEDsdgdGrl ++l++s+ +r+ ++++GlLl++++ ++++ l l+L+ +G+ mKIAA0533 1370 NrLHLSMLVRPHAASqGLLLSTApmsgRSPSLVLFLN------HGHF 1410 vlrydlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDg v + + + + +++s ++ GqWHrVsv++ ++++L+VDg mKIAA0533 1411 VAQTEGPG----PRLQVQSR----QHSRAGQWHRVSVRWGMQQIQLVVDG 1452 gnpvsges.....t.LdldkeesgplylGGlPe......lpvspgFrGCi + + s+++ +++ ++ + ++ + l +GGlP+++ +++lpvs gF+GC+ mKIAA0533 1453 SQTWSQKAlhhrvPrAERPQ--PYTLSVGGLPAssysskLPVSVGFSGCL 1500 rnlrvngk<-* + l+++ + mKIAA0533 1501 KKLQLDKQ 1508 LamG: domain 5 of 5, from 1550 to 1681: score 102.4, E = 5.4e-26 *->t.lsisfsFrTtspnGlLlyag...ggdflaleLvlEDsdgdGrlvl + s+++++r+ ++ Gl++++g+ + +++l + ++ l mKIAA0533 1550 PyVSLELEMRPLAAAGLIFHLGqalATPYMQLKVL------TEQVLL 1590 rydlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDg.g + + G+ g+++++++ +l+DG+WHrV+v++ + +++L VD ++ mKIAA0533 1591 QANDGA----GEFSTWVTY---PKLCDGRWHRVAVIMGRDTLRLEVDTqS 1633 npvsges..t.LdldkeesgplylGGlPe....lpvspgFrGCirnlrvn n+++g+ +++ ++ + l+lG lP +++ p p +rGC+r l +n mKIAA0533 1634 NHTTGRLpeSlAGSP----ALLHLGSLPKsstaRPELPAYRGCLRKLLIN 1679 gk<-* g mKIAA0533 1680 GA 1681 [output cut off at A = 10 top alignments] //