hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg03527/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0530  ( 1898 res)   mbg03527

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                    132.2    5.7e-35  10

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C2H2   1/10      7    31 ..     1    23 []    26.3   0.0043
ZnF_C2H2   2/10    285   310 ..     1    23 []    20.9     0.18
ZnF_C2H2   3/10    561   581 ..     1    23 []     0.5  2.8e+02
ZnF_C2H2   4/10   1079  1104 ..     1    23 []    21.7      0.1
ZnF_C2H2   5/10   1124  1149 ..     1    23 []    21.4     0.13
ZnF_C2H2   6/10   1291  1316 ..     1    23 []    14.9      6.6
ZnF_C2H2   7/10   1349  1374 ..     1    23 []    19.8     0.38
ZnF_C2H2   8/10   1393  1418 ..     1    23 []    15.5      5.5
ZnF_C2H2   9/10   1433  1458 ..     1    23 []    23.6    0.028
ZnF_C2H2  10/10   1562  1586 ..     1    23 []    19.1     0.64

Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 10, from 7 to 31: score 26.3, E = 0.0043
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                      y+C+++gCgk+++s++++++H+  H   
   mKIAA0530     7    YTCKFtGCGKVYRSQsEMEKHQDGH    31   

ZnF_C2H2: domain 2 of 10, from 285 to 310: score 20.9, E = 0.18
                   *->ykCpi.gCgksfssk.aLkrHmr.vH<-*
                      + C+++gC ++++s ++  +Hm++ H   
   mKIAA0530   285    FSCQVeGCTRTYNSSqSIGKHMKtAH    310  

ZnF_C2H2: domain 3 of 10, from 561 to 581: score 0.5, E = 2.8e+02
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C+  C + f+++++L  H+      
   mKIAA0530   561    FICSR-CYRAFTNPrSLGGHLS--    581  

ZnF_C2H2: domain 4 of 10, from 1079 to 1104: score 21.7, E = 0.1
                   *->ykCpi.gCgksfssk.aLkrHmr.vH<-*
                      ++C+ +gC++s  +k+aL +H+ ++H   
   mKIAA0530  1079    FVCQNqGCNYSAMTKdALFKHYGkIH    1104 

ZnF_C2H2: domain 5 of 10, from 1124 to 1149: score 21.4, E = 0.13
                   *->ykCpi.gCgksfssk.aLkrHmr.vH<-*
                      +kC ++ C k+f++ ++L+ H + vH   
   mKIAA0530  1124    FKCVVpSCTKTFTRNsNLRAHCQlVH    1149 

ZnF_C2H2: domain 6 of 10, from 1291 to 1316: score 14.9, E = 6.6
                   *->ykCpi.gCgksfssk.aLkrHmr.vH<-*
                      y C ++gC   f+ +++L+ H++ vH   
   mKIAA0530  1291    YCCVHqGCFAAFTIQqNLILHYQaVH    1316 

ZnF_C2H2: domain 7 of 10, from 1349 to 1374: score 19.8, E = 0.38
                   *->ykCpi.gCgksfssk.aLkrHmr.vH<-*
                      ++C++++C++ f   + L++H+++ H   
   mKIAA0530  1349    FRCQVsDCSRIFQAItGLIQHYMkLH    1374 

ZnF_C2H2: domain 8 of 10, from 1393 to 1418: score 15.5, E = 5.5
                   *->ykCpi.gCgksfssk.aLkrHmr.vH<-*
                      + C++  C+ sf+++ +++ H+   H   
   mKIAA0530  1393    FPCDQlECKLSFTTYlSYVVHLEvDH    1418 

ZnF_C2H2: domain 9 of 10, from 1433 to 1458: score 23.6, E = 0.028
                   *->ykCpi.gCgksfssk.aLkrHmr.vH<-*
                      ykC+ +gC++ + ++++L rH+ ++H   
   mKIAA0530  1433    YKCDCeGCDRIYATRsNLLRHIFnKH    1458 

ZnF_C2H2: domain 10 of 10, from 1562 to 1586: score 19.1, E = 0.64
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                      y C i+gC  + +s+++ +rH++ H   
   mKIAA0530  1562    YPCMIkGCTSVVTSEsNIIRHYKCH    1586 

	[output cut off at A = 10 top alignments]
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