hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg03527/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0530  ( 1898 res)   mbg03527

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                         119.2    7.7e-32  10

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C2H2    1/10      7    31 ..     1    24 []    30.4  4.2e-05
zf-C2H2    2/10    285   310 ..     1    24 []    21.2    0.024
zf-C2H2    3/10    561   586 ..     1    24 []    12.3      6.4
zf-C2H2    4/10   1079  1104 ..     1    24 []    11.0      8.5
zf-C2H2    5/10   1124  1149 ..     1    24 []    27.7  0.00028
zf-C2H2    6/10   1291  1316 ..     1    24 []    12.9      5.6
zf-C2H2    7/10   1349  1374 ..     1    24 []    14.8        2
zf-C2H2    8/10   1393  1418 ..     1    24 []    11.1      8.3
zf-C2H2    9/10   1433  1458 ..     1    24 []    23.0   0.0072
zf-C2H2   10/10   1562  1586 ..     1    24 []     7.6       18

Alignments of top-scoring domains:
zf-C2H2: domain 1 of 10, from 7 to 31: score 30.4, E = 4.2e-05
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      y+C+f++Cgk+++++s++++H+  H   
   mKIAA0530     7    YTCKFtGCGKVYRSQSEMEKHQDGH    31   

zf-C2H2: domain 2 of 10, from 285 to 310: score 21.2, E = 0.024
                   *->ykCpf.dCgksFsrksnLkrHlrt.H<-*
                      ++C++++C ++++++ +  +H++t H   
   mKIAA0530   285    FSCQVeGCTRTYNSSQSIGKHMKTaH    310  

zf-C2H2: domain 3 of 10, from 561 to 586: score 12.3, E = 6.4
                   *->ykCpfdCgksFsrksnLkrHlrt...H<-*
                      + C+  C ++F+++ +L  Hl +++ +   
   mKIAA0530   561    FICS-RCYRAFTNPRSLGGHLSKrsyC    586  

zf-C2H2: domain 4 of 10, from 1079 to 1104: score 11.0, E = 8.5
                   *->ykCpf.dCgksFsrksnLkrHlrt.H<-*
                      ++C+ ++C++s  +k+ L +H  + H   
   mKIAA0530  1079    FVCQNqGCNYSAMTKDALFKHYGKiH    1104 

zf-C2H2: domain 5 of 10, from 1124 to 1149: score 27.7, E = 0.00028
                   *->ykCpf.dCgksFsrksnLkrHlrt.H<-*
                      +kC ++ C k+F+r+snL++H +  H   
   mKIAA0530  1124    FKCVVpSCTKTFTRNSNLRAHCQLvH    1149 

zf-C2H2: domain 6 of 10, from 1291 to 1316: score 12.9, E = 5.6
                   *->ykCpf.dCgksFsrksnLkrHlrt.H<-*
                      y C +++C  +F+ + nL  H +  H   
   mKIAA0530  1291    YCCVHqGCFAAFTIQQNLILHYQAvH    1316 

zf-C2H2: domain 7 of 10, from 1349 to 1374: score 14.8, E = 2
                   *->ykCpf.dCgksFsrksnLkrHlrt.H<-*
                      ++C+++dC + F     L +H ++ H   
   mKIAA0530  1349    FRCQVsDCSRIFQAITGLIQHYMKlH    1374 

zf-C2H2: domain 8 of 10, from 1393 to 1418: score 11.1, E = 8.3
                   *->ykCpf.dCgksFsrksnLkrHlrt.H<-*
                      + C+  +C+ sF++  ++  Hl ++H   
   mKIAA0530  1393    FPCDQlECKLSFTTYLSYVVHLEVdH    1418 

zf-C2H2: domain 9 of 10, from 1433 to 1458: score 23.0, E = 0.0072
                   *->ykCpf.dCgksFsrksnLkrHlrt.H<-*
                      ykC+ ++C++ + ++snL rH+  +H   
   mKIAA0530  1433    YKCDCeGCDRIYATRSNLLRHIFNkH    1458 

zf-C2H2: domain 10 of 10, from 1562 to 1586: score 7.6, E = 18
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      y C +++C  + ++ sn  rH + H   
   mKIAA0530  1562    YPCMIkGCTSVVTSESNIIRHYKCH    1586 

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