hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh01226/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0529  ( 955 res)   mbh01226

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
UCH      Ubiquitin carboxyl-terminal hydrolase          430.5   1.5e-125   1
DUF1055  Domain of Unknown Function (DUF1055)           317.2    1.9e-91   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DUF1055    1/1      81   226 ..     1   147 []   317.2  1.9e-91
UCH        1/1     260   904 ..     1   273 []   430.5 1.5e-125

Alignments of top-scoring domains:
DUF1055: domain 1 of 1, from 81 to 226: score 317.2, E = 1.9e-91
                   *->eLketLiEgvDYvLvPqEvWrkLvsWYgleeGGPpieRKVIeqGlyq
                      +Lke+Li+++DY+L+P+E+W+kLvsWY+l+eG++pi+RKV+eqG+++
   mKIAA0529    81    SLKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFV 127  

                   ksysVEVYpleLkLtdgrDssksiTiRlSKkdsIgelyrevCelfsveqe
                   k+++VEVY++eLkL+++ ++++++T+R+SK+d+I+++++e++++f++++e
   mKIAA0529   128 KHCKVEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFNIPDE 177  

                   ketRiWdyyekkkyelLddldekTvedAgLqmdQdIliEarkvDGtwsSq
                   ke+R+W++y+++++e+L+++d +T++dAgL+++Q+++iE++++DGtw+++
   mKIAA0529   178 KEARLWNKYMSNTFEPLNKPD-STIQDAGLYQGQVLVIEQKNEDGTWPRG 226  

                   <-*
                      
   mKIAA0529     -     -    

UCH: domain 1 of 1, from 260 to 904: score 430.5, E = 1.5e-125
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   *->pgptGLvNlGNTCYmNSvLQcLfhipplrdyllsdsyeseinesnpl
                      pg++GL NlGNTC+mNS++QcL+++ppl++y+l+d+y+ e+n +npl
   mKIAA0529   260    PGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPL 306  

                RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   gskgsllcaladLfnalqsg.yksvvpsplkflqfkttlgkineefsgym
                   g+ g++++++a L+++++sg+ ++v+p+      fkt++g+++++fsgy+
   mKIAA0529   307 GMRGEIAKSYAELIKQMWSGkFSYVTPRA-----FKTQVGRFAPQFSGYQ 351  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxx xxx xxxxxxx
                   QqDAhEFllfLLdgLhedlnrvnkkpytepe.sdkrpd.kaa.eawknhs
                   QqD++E+l+fLLdgLhedlnr+ kkpy+  +++d+rpd+ +a+eaw+nh+
   mKIAA0529   352 QQDCQELLAFLLDGLHEDLNRIRKKPYIQLKdADGRPDkVVAeEAWENHL 401  

                RF xxxxxxxxxxxxxxxxx                                 
                   lrneslitdlFqGqles.................................
                   +rn+s+i+d+F+G ++s+  ++++ + + + ++ +  + + + +++++ +
   mKIAA0529   402 KRNDSIIVDIFHGLFKStlvcpecakisvtfdpfcyltlplpmkkersle 451  

                RF                                                   
                   ..................................................
                       + ++  ++ + +   ++ ++  + ++  +  ++ + ++   ++  +
   mKIAA0529   452 vylvrmdplakpmqykvivpkignildlctalsalsgvpadkmivtdiyn 501  

                RF                                                   
                   ..................................................
                   ++ ++    +++ ++  ++++    + + ++ +++++   + + +++ ++
   mKIAA0529   502 hrfhrifavdenlssimerddiyvfeininraedtehvvipvclrekfrh 551  

                RF                                                   
                   ..................................................
                   ++ +++++++  +++     ++++++++  +    + ++  + +++++++
   mKIAA0529   552 ssythhtgsslfgqpflmaiprnntedklynllllrmcryvkmsteteet 601  

                RF                                                   
                   ..................................................
                   +++ +++++++ +++++++ ++++++++ ++++++++++++++ ++++++
   mKIAA0529   602 dghlrccedqningngpnglheegspsemetdepddessqdqelpsenen 651  

                RF                                                   
                   ..................................................
                   ++++++ +++++++++ +++++++++ ++++++  + + ++ ++++ +  
   mKIAA0529   652 sqsedsvggdndsenglcteetckgqltghkkrlftfqfnnlgnndinyi 701  

                RF                                                   
                   ..................................................
                   ++++++ + ++++ + ++++    + +++ +++  +++  ++ +++++ +
   mKIAA0529   702 kddtshirfddrqlrldersflaldwdpdlkkryfdenaaedfekhesve 751  

                RF                                            xxxxxxx
                   ...........................................rlkisrL
                    ++++++  + +++ +  +++++ + +++  +++++++++ +++l++++L
   mKIAA0529   752 ykppkrpfvklkdcielfttkeklgaedpwycpnckehqqatkKLDLWSL 801  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx   xxxxx
                   PpiLiihLKRFkydgetgmnkKindkVefPleLdlssyctae...pplkY
                   Pp+L++hLKRF+y++   m+ K+++ V+fP+ ++++s+++ +++ +p++Y
   mKIAA0529   802 PPVLVVHLKRFSYSRY--MRDKLDTLVDFPISDLDMSEFLINpnaGPCRY 849  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   eLyaVvvHsGsslsgGHYiayikkkkknnkWykfDDekVsevseeevler
                   +L+aV++H+G +++gGHY+a++k +k+++kWy+fDD++Vs +se+++  +
   mKIAA0529   850 NLIAVSNHYG-GMGGGHYTAFAK-NKDDGKWYYFDDSSVSTASEDQI--V 895  

                RF xxxxxxxxx   
                   sssAYiLFY<-*
                   s++AY+LFY   
   mKIAA0529   896 SKAAYVLFY    904  

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