hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mic/mic36088/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0524  ( 729 res)   mic36088

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SAM_2    SAM domain (Sterile alpha motif)                96.5    5.1e-25   2
SAM_1    SAM domain (Sterile alpha motif)                52.0    1.3e-11   2
Arm      Armadillo/beta-catenin-like repeat              18.5       0.16   2
TIR      TIR domain                                     -20.9      0.047   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Arm        1/2     123   163 ..     1    41 []    13.1      1.9
Arm        2/2     205   245 ..     1    41 []     9.9      4.8
SAM_1      1/2     420   479 ..     1    66 []    39.1    1e-07
SAM_2      1/2     419   481 ..     1    72 []    42.6    9e-09
SAM_1      2/2     485   551 ..     1    66 []    13.2    0.022
SAM_2      2/2     484   553 ..     1    72 []    54.0  3.3e-12
TIR        1/1     569   709 ..     1   150 []   -20.9    0.047

Alignments of top-scoring domains:
Arm: domain 1 of 2, from 123 to 163: score 13.1, E = 1.9
                   *->npenkqavveaGalppLvqLLsspdeevqeeAawALsNLaa<-*
                       +   +a++  G+l +L++LL+ p+ e++ +Aa+ L  +     
   mKIAA0524   123    AQGLCDAIRLDGGLDLLLRLLQAPELETRVQAARLLEQILV    163  

Arm: domain 2 of 2, from 205 to 245: score 9.9, E = 4.8
                   *->npenkqavveaGalppLvqLLsspdeevqeeAawALsNLaa<-*
                      ++e  q +v aG+l + +  ++ +d+ +++ +a AL N a    
   mKIAA0524   205    SEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALANCAL    245  

SAM_1: domain 1 of 2, from 420 to 479: score 39.1, E = 1e-07
                   *->dgwsvesVgeWLesigllgqYidnFlaagyidgdtllqlteeDLed.
                        w    V+ WL+ ig  +qY++nF       gd+ll+lt e+L+ +
   mKIAA0524   420    ASWKEAEVQTWLQQIGF-SQYCENF------RGDLLLRLTDEELQTd 459  

                   lGvtllGHrkkIlssIqgLk<-*
                   lG+++   rk+  + +  Lk   
   mKIAA0524   460 LGMKSSITRKRFFRELTELK    479  

SAM_2: domain 1 of 2, from 419 to 481: score 42.6, E = 9e-09
                   *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa
                      v sw+  +v+ WL++ig+  qY++nF+     g +ll lrlt e+L 
   mKIAA0524   419    VASWKEAEVQTWLQQIGF-SQYCENFR-----G-DLL-LRLTDEEL- 456  

                   klalGitsvghRkkilskiqelkqq<-*
                   + +lG+ s + Rk+  +++ elk++   
   mKIAA0524   457 QTDLGMKSSITRKRFFRELTELKTF    481  

SAM_1: domain 2 of 2, from 485 to 551: score 13.2, E = 0.022
                   *->dgwsvesVgeWLesigl.lgqYidnFlaagyidgdtllqlteeDLed
                         + + +++WL s++ +  qY+   ++ g+ d  +l + +e+ L++
   mKIAA0524   485    ATCDRSNLADWLGSLDPrFRQYTYGLVSCGL-DRSLLHRVSEQQLLE 530  

                   .lGvtllGHrkkIlssIqgLk<-*
                   + G++l  Hr +Ils+ + +    
   mKIAA0524   531 dCGIRLGVHRTRILSAAREML    551  

SAM_2: domain 2 of 2, from 484 to 553: score 54.0, E = 3.3e-12
                   *->veswslesvaeWLesi..glegqYkdnFsdqgitglellllrlteed
                      + +++ +++a+WL s+++++ +qY++ + ++g++  +ll +r++e++
   mKIAA0524   484    YATCDRSNLADWLGSLdpRF-RQYTYGLVSCGLDR-SLL-HRVSEQQ 527  

                   LaklalGitsvghRkkilskiqelkqq<-*
                   L ++++Gi +  hR +ils++ e++++   
   mKIAA0524   528 L-LEDCGIRLGVHRTRILSAAREMLHS    553  

TIR: domain 1 of 1, from 569 to 709: score -20.9, E = 0.047
                   *->vFisfsgksrsnddrdtFvshllkeLeekkqpginlfiddrDelpGe
                      vFis+++      +  +++s l+ +L      g+ +fid + +++G+
   mKIAA0524   569    VFISYRR-----NSGSQLASLLKVHLQLH---GFSVFIDVEKLEAGK 607  

                   silenlfeaIekSRiaivifS....snyasSeLWCLdELveimkcaleqg
                     +  + + I      + ++S +  ++ +++   C d +++    al+ g
   mKIAA0524   608 FEDKLIQSVIAARNF-VLVLSagalDKCMQDH-DCKDWVHKEIVTALSCG 655  

                   nkkvilpiFykVd..psdvrpkqtgkFgkaflktlkwsgdktersqsdri
                     k i+pi    + ++ + +p +  +  + f+  +kws++ +e  ++++i
   mKIAA0524   656 --KNIVPIIDGFEwpEPQALP-EDMQAVLTFN-GIKWSHEYQE-ATIEKI 700  

                   kfWkkalya<-*
                    +  + + +   
   mKIAA0524   701 IRFLQGRPS    709  

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