hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp04032/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0523  ( 605 res)   mbp04032

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WSC      present in yeast cell wall integrity and str   249.9    2.1e-70   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WSC        1/2     172   264 ..     1   103 []   147.4  1.5e-39
WSC        2/2     275   370 ..     1   103 []   109.6  3.6e-28

Alignments of top-scoring domains:
WSC: domain 1 of 2, from 172 to 264: score 147.4, E = 1.5e-39
                   *->gatYvGCysdddvssrtlaakssyayhsSnmsveaCYqnfCaskGya
                      + +Y+GC+s+ + ++rtl+++++y+ ++  m+v++C q++Ca+++y 
   mKIAA0523   172    RGNYLGCFSEEG-QERTLKGAVFYDLRK--MTVSHC-QDACAERSYV 214  

                   lAaLengneCYCGdslpstsvsdeddssqCstkCsGplypaevCGGpsrl
                   +A+Le+g+eCYCG++lp+t vs      +C+++C+G  +++++CG+  rl
   mKIAA0523   215 YAGLEAGAECYCGNRLPATRVS----LKECNQECKG--EKGSMCGAVRRL 258  

                   svYvla<-*
                   svY+ +   
   mKIAA0523   259 SVYSVG    264  

WSC: domain 2 of 2, from 275 to 370: score 109.6, E = 3.6e-28
                   *->gatYvGCysdddvssrtlaakssyayhsSnmsveaCYqnfCaskGya
                      +atY+GC++ +  ++ t+++ ss ++++  m+ve+C + fC++k+++
   mKIAA0523   275    TATYRGCFPLP--ENVTHTFSSSMTQAN--MTVETC-SGFCSQKEFP 316  

                   lAaLengneCYCGdslpstsvsdeddssqCstkCsGplypaevCGGpsrl
                   lA+L+ g++CYC++++p++s++d++d ++Cs++++ +  +  +C++++++
   mKIAA0523   317 LAILR-GWDCYCAYPTPQFSLRDAVDGALCSQAPETQ-GLPGYCEVYQTP 364  

                   svYvla<-*
                   ++++++   
   mKIAA0523   365 VQDTRC    370  

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