hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp04032/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0523  ( 605 res)   mbp04032

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
WSC             WSC domain                              146.2    5.9e-40   2
Sulfotransfer_1 Sulfotransferase domain                 -57.7     0.0061   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
WSC               1/2     175   254 ..     1    88 []   125.4  1.1e-33
WSC               2/2     278   353 ..     1    88 []    27.9  1.2e-05
Sulfotransfer_1   1/1     379   591 ..     1   363 []   -57.7   0.0061

Alignments of top-scoring domains:
WSC: domain 1 of 2, from 175 to 254: score 125.4, E = 1.1e-33
                   *->YlGCysDnsngsarlltaqtyadg.tmTveaCaafCasaGyayAGlE
                      YlGC+s+ +    r+l++++++d ++mTv++C+++Ca+++y yAGlE
   mKIAA0523   175    YLGCFSEEGQE--RTLKGAVFYDLrKMTVSHCQDACAERSYVYAGLE 219  

                   yggeCyCGnslpsgnsvpaakvddsqCnmtCpGdlpteiCGG<-*
                   +g eCyCGn lp      a+ v+ ++Cn+ C+G+ + ++CG+   
   mKIAA0523   220 AGAECYCGNRLP------ATRVSLKECNQECKGE-KGSMCGA    254  

WSC: domain 2 of 2, from 278 to 353: score 27.9, E = 1.2e-05
                   *->YlGCysDnsngsarlltaqtyadgtmTveaCaafCasaGyayAGlEy
                      Y+GC++   n ++++ ++ t+a+  mTve+C+ fC+++ +++A l  
   mKIAA0523   278    YRGCFPLPENVTHTFSSSMTQAN--MTVETCSGFCSQKEFPLAILR- 321  

                   ggeCyCGnslpsgnsvpaakvddsqCnmtCpGdlpteiCGG<-*
                   g  CyC  + p++       vd ++C+++     +t+   G   
   mKIAA0523   322 GWDCYCAYPTPQFSL--RDAVDGALCSQA---P-ETQ---G    353  

Sulfotransfer_1: domain 1 of 1, from 379 to 591: score -57.7, E = 0.0061
                   *->pdDvliv..typKSGTTWlqeilslhpDvFYLfEPLwHVeiynrgdf
                      + +v+++ +++p  G TW  +++ +                   g +
   mKIAA0523   379    KSKVFVAlsSFPGAGNTWARHLIEH-----------------ATGFY 408  

                   sspekceepplfnnphdrvPfLElydlffPealesvgpeLFrrgSRLCsP
                         +   +f+  + + +++         +  ++              
   mKIAA0523   409 ------TGSYYFDG-TLYNKGFKG-------EKDHW-------------- 430  

                   VCdfkeiksdckrlcgllnlelalekcrsyfhveegverlknlpsPRllk
                                                  ++  ++      + +R + 
   mKIAA0523   431 -------------------------------RSRRTICVKTHESGRREIE 449  

                   DTHLPlhlLPkslldskcKiIYvvRNPkDvaVSyYhfsrmlkewmkvlte
                               ++ds    I ++RNP   +V  ++  ++ +        
   mKIAA0523   450 ------------MFDS---AILLIRNPYRSLVAEFNRKCAGH-------- 476  

                   rvilpepgtpffevlan.al.effelFlaGkvvyGsyfdHvkgwwkaslr
                     +  +p+   +    ++  +ef       +    ++ +Hv+ w+k    
   mKIAA0523   477 --LGYAPDRN-WK---SkEWpEF------VNSYASWWSSHVLDWLK---- 510  

                   kpenvLflrYEDlkeDPrgeikkiaeFLGkplseEeEeGrldkilkhlsF
                     +++L ++YE+l+  +  + +++  FL ++ seE     l         
   mKIAA0523   511 YGKRLLVVHYEELRHSLVPTLREMVAFLNVSVSEER----LLC------- 549  

                   enmKgnpmvnyselpteimdhengiEspffRKGivgdWGRqknhftveqa
                          + n        +++     ++f R+G        +  ft+e+ 
   mKIAA0523   550 -------VEN--------NKE-----GSFRRRGRRPHD---QEPFTPEMK 576  

                   ekfdeiyehNklsekmkgtg<-*
                   + ++ +++        + +    
   mKIAA0523   577 DLINGYIR-----TVDQALR    591  

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