hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp09103/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0522  ( 646 res)   mbp09103

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
Sec7       Sec7 domain                                  -13.7    1.8e-06   1
Extensin_2 Extensin-like region                        -145.5       0.87   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
Sec7         1/1       2    99 ..     1   221 []   -13.7  1.8e-06
Extensin_2   1/1     310   628 ..     1   385 []  -145.5     0.87

Alignments of top-scoring domains:
Sec7: domain 1 of 1, from 2 to 99: score -13.7, E = 1.8e-06
                   *->lksrkkqliegrkkFNqkPkkGiedLiskglladdkdpqdiAkfLle
                                                                  ++ 
   mKIAA0522     2    --------------------------------------------IR- 3    

                   eteGLdKkaiGefLGenddfniqvLneFvkNlFdFtglpLdeALRlfLks
                                               v                     
   mKIAA0522     4 ----------------------------VQ-------------------- 5    

                   FRLPGEaQkIdRileaFSerYiqcQyNpgvfsnkkaEDdIecvqpdaDsa
                       GEaQk +R++eaFS+rY+ c  Np ++              + D+ 
   mKIAA0522     6 ----GEAQKVERLIEAFSQRYCVC--NP-ALVRQ---------FRNPDTI 39   

                   yvLsYSlIMLNTDLHNNpqVKkKkikMTledFieNnrrdLREENEYEELg
                   ++L++++I+LNTD   +p VK    kM l+dFi+N+r            g
   mKIAA0522    40 FILAFAIILLNTDMY-SPSVKAE-RKMKLDDFIKNLR------------G 75   

                   indGgDlprefLtelYesIkneei<-*
                   +++G+D+pr++L  +Y  I+  e+   
   mKIAA0522    76 VDNGEDIPRDLLVGIYQRIQGREL    99   

Extensin_2: domain 1 of 1, from 310 to 628: score -145.5, E = 0.87
                   *->lltlvvalvslslpseasakYsYsSPPPpekpYvYkSPPpPspkyvy
                      +      + sl +  e s   + sSP P                   
   mKIAA0522   310    KRGRRNSVGSLDSTIEGS---VISSPRPH-----------------Q 336  

                   kSPPPpkkpYvYsSPPPPsyvykSPPPPkp......yvYkSPPpPkyvYk
                   + PPPp        PPPP+  ykS  P + +++  + ++ S  + k  ++
   mKIAA0522   337 RMPPPP--------PPPPPEEYKSQRPVSNsssflgSLFGS-KRGKGPFQ 377  

                   SPPpPv...........................................y
                    PPpP ++ + ++++ ++++++++++++++++++ +  ++++++ +  + 
   mKIAA0522   378 MPPPPTgqasassssassthhhhhhhhhghshgglgvlpdgqsklqalhA 427  

                   kYkSPPPPthsppPpyvykSPPPPpkkyvykSpPpptPvYkYkSPPPPpy
                    Y   P P    pPpy      PP+        Pp         PPPP  
   mKIAA0522   428 QYCQGPGPA---PPPYL-----PPQ-------QPPL--------PPPP-- 452  

                   vYkspPpPvkkripyvYkSPPPPpPYvYkSpPppvk.kyiyksppppeph
                        PpP ++      + PPPP      S+Pp+ ++++ + + p p p+
   mKIAA0522   453 ---QQPPPLPQ----LGSIPPPPA-----SAPPVGPhRHFHAHGPVPGPQ 490  

                   kYvYkSPPPPpPYvyesvpeqkikYvYkSPPPPkksYkspsppkyVYkSp
                   +Y    P   p          ++++     P  + + ++p+ p + Y  +
   mKIAA0522   491 HYTLGRPGRAP----RRGAGGHPQFA----PHGRHPLHQPTSPLPLYSPA 532  

                   PpPvipykYkSPPPPkkkyspaPrkpyvYkSPPPPtyvYkSpPpPykppt
                   P           PP +k+ +    k+++++  P   +       P  + +
   mKIAA0522   533 PQ-H--------PPAHKQGP----KHFIFSHHPQMMPAAGAAGGPG-SRP 568  

                   ppkiyksPPPPtPvyvYkspPpippiksssppPvyvYkSpPppvysPPPP
                   p+  y+ P  P      +sp    p  + +p+P y    pP p++sP  P
   mKIAA0522   569 PGGSYSHPHHP------QSPLS--PHSPIPPHPSY----PPLPPPSPHTP 606  

                   yvYssPPPPvyvynsaPvykksPPkhhYiYsSPPPphh<-*
                      +sP PP+              +h    +S PP      
   mKIAA0522   607 ---HSPLPPTS-------------PHGPLHASGPPGTA    628  

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