hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg02422/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0521  ( 740 res)   mbg02422

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PH       PH domain                                       49.8    6.1e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PH         1/1      97   198 ..     1    92 []    49.8  6.1e-11

Alignments of top-scoring domains:
PH: domain 1 of 1, from 97 to 198: score 49.8, E = 6.1e-11
                   *->vikeGwLlkkggkkswkkRyfvLfndvLlyykdkk........kkpk
                      ++ eG L  k+  ++ k++ +vL +dvLl+ ++k+++    + +++ 
   mKIAA0521    97    LHLEGALCWKSTSGRLKDVLAVLLTDVLLLLQEKDqkyvfasvDSKP 143  

                   gsipLsgiqvekvpdnkrkncFeirt.dr..etlllqaeseeerkeWvka
                    +i+L+++ v++v +  +k +F i+ +++++e ++++++s e+r+ W+++
   mKIAA0521   144 PVISLQKLIVREVANE-EKAMFLISAsMQgpEMYEMYTSSKEDRNIWMAH 192  

                   iqsair<-*
                   i++a++   
   mKIAA0521   193 IRRAVE    198  

//