hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj13077/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA0517  ( 787 res)   mfj13077

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BBC      B-Box C-terminal domain                        142.4    4.6e-38   1
BBOX     B-Box-type zinc finger, protein interaction     62.5    5.4e-14   1
RING     Ring finger                                     45.2    8.9e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RING       1/1      66   106 ..     1    23 []    45.2  8.9e-09
BBOX       1/1     156   197 ..     1    51 []    62.5  5.4e-14
BBC        1/1     204   330 ..     1   132 []   142.4  4.6e-38

Alignments of top-scoring domains:
RING: domain 1 of 1, from 66 to 106: score 45.2, E = 8.9e-09
                   *->CpICle....pvvlpCgH.FCr.Ci............CPlC<-*
                      C+ICle+ ++p+vlpC H+FC++C+++  + ++ + +CP+C   
   mKIAA0517    66    CSICLEryknPKVLPCLHtFCErCLqnyipahsltlsCPVC    106  

BBOX: domain 1 of 1, from 156 to 197: score 62.5, E = 5.4e-14
                   *->eraplCeeHgdeepaeffCveedgallCrdCdeageHqanklfrgHr
                      ++++ C++H+ ++++ef+C +++++++Cr+C+e  eH      + H 
   mKIAA0517   156    GKPLSCPNHD-GNVMEFYC-QSCETAMCRECTEG-EH------AEHP 193  

                   vvll<-*
                   +v+l   
   mKIAA0517   194 TVPL    197  

BBC: domain 1 of 1, from 204 to 330: score 142.4, E = 4.6e-38
                   *->qreaLeelleklrkkaeelekalkqldsiiqevegGqvdenaeevea
                      ++++L+ +l++++k+ +e+ +al+ + +ii++++     ++++ +  
   mKIAA0517   204    HKASLQVQLDAVNKRLPEIDSALQFISEIIHQLT-----NQKASIVD 245  

                   eikaafdeLrnaLnerkkqLledLeevkenklkkLeqQlesltqkqekle
                   +i+ +fdeL+++Ln rk +Ll++Le  ++ k+k+L++Ql++l q+qe ++
   mKIAA0517   246 DIHSTFDELQKTLNVRKSVLLMELEVNYGLKHKVLQSQLDTLLQGQESIK 295  

                   hainfaeeaLnsgdptelLlskkliierlqellkq<-*
                   ++ nf+ +aLn+g+ te+Ll+kk+++e+l+el++q   
   mKIAA0517   296 SCSNFTAQALNHGTETEVLLVKKQMSEKLNELADQ    330  

//