hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mia/mia09016/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0512  ( 832 res)   mia09016

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DUF634   Protein of unknown function (DUF634)           631.1   6.1e-186   1
Arm      Armadillo/beta-catenin-like repeat              18.8       0.13   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Arm        1/2     575   616 ..     1    41 []     1.6       51
Arm        2/2     619   657 ..     1    41 []    17.1     0.41
DUF634     1/1     565   826 ..     1   264 []   631.1 6.1e-186

Alignments of top-scoring domains:
Arm: domain 1 of 2, from 575 to 616: score 1.6, E = 51
                   *->npenkqavveaGalppLvqLLs.spdeevqeeAawALsNLaa<-*
                       p  ++++     l+  + LL++s+d+ +q++A+ +LsN a    
   mKIAA0512   575    FPYEIDEILGVRDLRKVLALLQkSDDPFIQQVALLTLSNNAN    616  

Arm: domain 2 of 2, from 619 to 657: score 17.1, E = 0.41
                   *->npenkqavveaGalppLvqLLsspdeevqeeAawALsNLaa<-*
                      +++  ++++++G+lp++ ++++ +d+ ++e A+ A+ NL+    
   mKIAA0512   619    CNQ--ETIRKLGGLPIIANMINKTDPHIKEKALMAMNNLSE    657  

DUF634: domain 1 of 1, from 565 to 826: score 631.1, E = 6.1e-186
                   *->rrpspskkfafPysiDdiLsaeeLqKlLaLLesTeDPfIheiAlitL
                      +r++p++k++fPy+iD+iL++++L+K+LaLL++++DPfI+++Al+tL
   mKIAA0512   565    KRTIPMHKRPFPYEIDEILGVRDLRKVLALLQKSDDPFIQQVALLTL 611  

                   GNnAAYsfNQeiIReLGgvpIIanlintpdpiikeKALiaLNNlSvnsEn
                   +NnA+Ys+NQe+IR+LGg+pIIan+in++dp+ikeKAL+a+NNlS+n+En
   mKIAA0512   612 SNNANYSCNQETIRKLGGLPIIANMINKTDPHIKEKALMAMNNLSENYEN 661  

                   QrkikvYinqVCdDtisspLNSaVQlAGLkLLTnmTvtNdyQHlLansis
                   Q++++vY+n+V+dD+++s+LNSaVQ++GLk+LTnmT+tNdyQHlL+nsi+
   mKIAA0512   662 QGRLQVYMNKVMDDIMASNLNSAVQVVGLKFLTNMTITNDYQHLLVNSIA 711  

                   dfFrLLskGNgkTKvqVLKLLlNLsENPAmTReLlsakVpSSLlSLFNkk
                   +fFrLLs+G+gk+Kv++LK+L+N++ENP+m+++Ll+++VpSS++SL+N++
   mKIAA0512   712 NFFRLLSQGGGKIKVEILKILSNFAENPDMLKKLLGTQVPSSFSSLYNSY 761  

                   eakEiLLniLtlFeNIndnlKtEgklftqeeFtkGSLffllkesgvCaqK
                   +++EiL+n+LtlFe+I+dnl++E  +f+++eF+kGSLf+l+++sgvC++K
   mKIAA0512   762 VESEILINALTLFEIIFDNLRAE--VFNYREFNKGSLFYLCTTSGVCVKK 809  

                   lrALasHhDleVKvKVi<-*
                   +rALa+HhDl+VKvKVi   
   mKIAA0512   810 IRALANHHDLLVKVKVI    826  

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