hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mni/mni11136/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0491  ( 396 res)   mni11136

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BAR      BAR domain                                     328.5    7.6e-95   1
SH3_1    SH3 domain                                      45.3    1.4e-09   1
SH3_2    Variant SH3 domain                              39.1    9.9e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BAR        1/1      42   285 ..     1   264 []   328.5  7.6e-95
SH3_1      1/1     339   395 ..     1    58 []    45.3  1.4e-09
SH3_2      1/1     340   395 ..     1    69 []    39.1  9.9e-08

Alignments of top-scoring domains:
BAR: domain 1 of 1, from 42 to 285: score 328.5, E = 7.6e-95
                   *->lkKqAGgffnRasqllkeKvGkaekTkvLDedFeelerrfdtteklv
                      l+ +AG+f++Ra q+++eK+G aekT+ LD ++e+l  ++++t+ ++
   mKIAA0491    42    LAADAGTFLSRAVQFTEEKLGQAEKTE-LDAHLENLLSKAECTKIWT 87   

                   kklvketklYlqpnpaarakqkvleklskrrgqvkrkgypqPetlLaetm
                   +k++k+t+  lqpnp ar +++v+ekl+  r++++r+++p+   lL+++m
   mKIAA0491    88 EKIMKQTEVLLQPNPNARIEEFVYEKLD--RKAPSRINNPE---LLGQYM 132  

                   qeigeelgddsedPfGkaLekygeamkqlaqlleqldervkqnfldPltn
                   +++g+e+g+++   +G+aL+k+ge++k+++ + ++l+++ + nfl+Pl+n
   mKIAA0491   133 IDAGTEFGPGTA--YGNALIKCGETQKRIGTADRELIQTSALNFLTPLRN 180  

                   llekefkeiqkhikKlerKrLDyDakrtrlkkaktkkskkakDekklakA
                   ++e+++k+i k++k l++KrLD+Da++trlkkak+ ++k+++        
   mKIAA0491   181 FIEGDYKTIAKERKLLQNKRLDLDAAKTRLKKAKAAETKSSS-------- 222  

                   dqleeElrqAqqkfEelneeLkeeLpnlleleveflvnqlqafveaqldf
                      e+Elr  q +f++++e+++ +L++++++++++l ++l +fveaq+++
   mKIAA0491   223 ---EQELRITQSEFDRQAEITRLLLEGISSTHAHHL-RCLNDFVEAQMTY 268  

                   hrqsaqlleqlqqqLdk<-*
                   ++q++q++ +lq qL++   
   mKIAA0491   269 YAQCYQYMLDLQKQLGS    285  

SH3_1: domain 1 of 1, from 339 to 395: score 45.3, E = 1.4e-09
                   *->kkvvALYDYearesdELsFkkGDvitvleksdd..gWWkgrlkgtgG
                      +k+++LYDY+a +s ELs+   +vitv + +  +++W+ g++    +
   mKIAA0491   339    RKARVLYDYDAANSTELSLLADEVITVFSVVGMdsDWLMGERG---N 382  

                   keGliPsNYVepv<-*
                   ++G +P +Y+e+    
   mKIAA0491   383 QKGKVPITYLELL    395  

SH3_2: domain 1 of 1, from 340 to 395: score 39.1, E = 9.9e-08
                   *->ygraiedyvaAtdknenleeeeLslkkGdvvkvidvggskddd.gww
                      ++r++ dy+a ++ +e      Lsl +++v+ v+   +  + d++w 
   mKIAA0491   340    KARVLYDYDA-ANSTE------LSLLADEVITVF---SVVGMDsDWL 376  

                   lgeslggGrrrRGlvPssaveel<-*
                    ge+  g+++  G vP +++e l   
   mKIAA0491   377 MGER--GNQK--GKVPITYLELL    395  

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