hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg05332/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0488  ( 519 res)   mbg05332

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PX       PhoX homologous domain, present in p47phox a    84.5    1.3e-20   1
PDZ      Domain present in PSD-95, Dlg, and ZO-1/2.      78.4    8.8e-19   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PDZ        1/1      42   127 ..     1    80 []    78.4  8.8e-19
PX         1/1     147   256 ..     1   142 []    84.5  1.3e-20

Alignments of top-scoring domains:
PDZ: domain 1 of 1, from 42 to 127: score 78.4, E = 8.8e-19
                   *->gglGfsivg..................gifvssvvpGspAakaGrks
                       g+Gf+++g+ +++++ ++ +++   +   vs v+pG++A++aG   
   mKIAA0488    42    SGYGFNVRGqvseggqlrsingelyapLQHVSAVLPGGAADRAG--- 85   

                   lglLkvGDvIleVNGetsvegltheeavdllkkaggggvGekvtLtvlRg
                      +++GD+IleVNG ++veg+th ++vdl+++  +     ++ Ltvl  
   mKIAA0488    86 ---VRKGDRILEVNG-VNVEGATHKQVVDLIRAGEK-----ELILTVLSV 126  

                   g<-*
                   +   
   mKIAA0488   127 P    127  

PX: domain 1 of 1, from 147 to 256: score 84.5, E = 1.3e-20
                   *->dniai.vavveeetsgkkrgdgkhyyyvieietstnedveewtvyRR
                      d++ ++++++  +t+ k+   + ++++v+++ + +     ++++++R
   mKIAA0488   147    DYTEKqAVPISVPTY-KHVEQNGEKFVVYNVYMAG-----RQLCSKR 187  

                   YsdFleLhskLlkkfpqekrrriiPplPekkllgryreraekesmkvkks
                   Y++F  Lh+ L+++f     + ++P lP+k+ ++                
   mKIAA0488   188 YREFAILHQNLKREFA----NFTFPRLPGKWPFS---------------- 217  

                   lnnfseefiekRrrgLerYLqkllnhPelinhyrvsevvleFLess<-*
                      +se++++ RrrgLe+YL+k+++++++ +    s++++eFL+ s   
   mKIAA0488   218 ---LSEQQLDARRRGLEEYLEKVCSIRVIGE----SDIMQEFLSES    256  

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