hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg05332/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0488  ( 519 res)   mbg05332

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PX       PX domain                                       85.3    1.3e-21   1
RA       Ras association (RalGDS/AF-6) domain            78.2    1.7e-19   1
PDZ      PDZ domain (Also known as DHR or GLGF)          61.8    1.4e-14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PDZ        1/1      34   124 ..     1    82 []    61.8  1.4e-14
PX         1/1     152   256 ..     1   133 []    85.3  1.3e-21
RA         1/1     264   353 ..     1    98 []    78.2  1.7e-19

Alignments of top-scoring domains:
PDZ: domain 1 of 1, from 34 to 124: score 61.8, E = 1.4e-14
                   *->evtlekevkrgglGfsikggsdk..............givvsevlpG
                       v++ k  + +g Gf+++g+ +++++ ++ +++   +  +vs vlpG
   mKIAA0488    34    VVRIVK--SESGYGFNVRGQVSEggqlrsingelyapLQHVSAVLPG 78   

                   sgaAeagGrLkeGDqIlsvNGqdvenlsheravlalkgsggsevtLtil<
                    gaA+++G  ++GD+Il+vNG++ve+ +h ++v++++   + e+ Lt+l 
   mKIAA0488    79 -GAADRAG-VRKGDRILEVNGVNVEGATHKQVVDLIRAGEK-ELILTVL  124  

                   -*
                     
   mKIAA0488     -    -    

PX: domain 1 of 1, from 152 to 256: score 85.3, E = 1.3e-21
                   *->dsilivvvvdpetsrkkegskkhtyyvyeittktnkewsVkRRYsdF
                        + i v ++ +++       +  ++vy++ + +  + ++++RY++F
   mKIAA0488   152    QAVPISVPTYKHVE-----QNGEKFVVYNVYMAG--RQLCSKRYREF 191  

                   eeLhekLlrkfpalgrilPplPpKklfgryrkeslemtsvkhssnnfdee
                     Lh+ L+r+f   + ++P lP+K+ f+                  ++e+
   mKIAA0488   192 AILHQNLKREFA--NFTFPRLPGKWPFS------------------LSEQ 221  

                   fiekRrkgLeeyLqrllqhPelsnesevvleFLesd<-*
                   +++ Rr+gLeeyL++++++ ++ + s++++eFL+++   
   mKIAA0488   222 QLDARRRGLEEYLEKVCSIRVIGE-SDIMQEFLSES    256  

RA: domain 1 of 1, from 264 to 353: score 78.2, E = 1.7e-19
                   *->dsgvlrVygedgtpgtyktilvskntTaeeViralLrKfgldaddpe
                      ++ +lrV+++dgt   ++t++v kn+T+++V +a++ K g+d ++ +
   mKIAA0488   264    SDVELRVALPDGT---TVTVRVKKNSTTDQVYQAIAAKVGMDSTTVN 307  

                   dyvLvEvslvlerggeerrvLpddEkPlqiqlqlkrdaqvrsrFlLrrre
                   +++L+     ++ + + r +L ++E P+++++q++++a++++++  r++ 
   mKIAA0488   308 YFALF----EVINHSFVR-KLAPNEFPHKLYVQNYTSAVPGTCLTIRKWL 352  

                   d<-*
                   +   
   mKIAA0488   353 F    353  

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