hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg09953/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0483  ( 368 res)   mbg09953

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
F-box    F-box domain                                    24.8     0.0021   1
DivIVA   DivIVA protein                                 -69.3       0.46   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
F-box      1/1      64   108 ..     1    44 []    24.8   0.0021
DivIVA     1/1     233   362 ..     1   382 []   -69.3     0.46

Alignments of top-scoring domains:
F-box: domain 1 of 1, from 64 to 108: score 24.8, E = 0.0021
                   *->lldLPdellleIlsrLdpkdllrlslVSkrwrslvdsllwf.kll<-
                      l  LP+ ++++Ils++++ ++ +l+lV+kr+  +++++l+ ++l+  
   mKIAA0483    64    LVALPIVAIENILSFMSYDEISQLRLVCKRMDLVCQRMLNQgFLK   108  

                   *
                    
   mKIAA0483     -   -    

DivIVA: domain 1 of 1, from 233 to 362: score -69.3, E = 0.46
                   *->Mpspnv.....KLTPkDIhekeFktsmiGKRGYdkdEVDeFLDiVi.
                      M sp v++++  LT+     + F+++       +  EV ++  +V++
   mKIAA0483   233    MGSPPVpgpsaALTTM----QLFSKQN-----PSRQEVTKLQQQVRt 270  

                   ..kDYEaflqenedLeqeikeLdeelkefdnaeetlqAtqAiPAYEPEPG
                   +++ ++++ +e+++L+ ++ e +++l+                       
   mKIAA0483   271 ngAGVTVLRREISELRTKVQEQQKQLQ----------------------- 297  

                   KPAPAAVSAGmNEEqALKAnksivvAqetaeelretAkaEAdlllqeaek
                                       +   + + t+                    
   mKIAA0483   298 -------------------DQDQKLLEQTQ-------------------- 308  

                   naarilaeaerkaddivreAkqraaelltaarnRyaeleRdahdkllAre
                       i++e+                                      Ar 
   mKIAA0483   309 ----IIGEQ-------------------------------------NARL 317  

                   fDilkRlsrlekelkgqkrvLeGRLealRqeeaefrqRlksliEsQLell
                   ++ +++l + ++   g ++                               
   mKIAA0483   318 AELERKLREVMESAVGTSSG------------------------------ 337  

                   nsddwdelldptadylsnaedelkevleealeaarvtldkvgAlsevpde
                             + ++                                    
   mKIAA0483   338 ----------SGQS------------------------------------ 341  

                   laaaleeaeaevesgtkeltdfeleplaeksveVevgledavpvyagdaa
                                                                  +++
   mKIAA0483   342 -----------------------------------------------EES 344  

                   eearPlldDSEiFPELDSKAPAEtAEvvEKDnqgedqlfeeke<-*
                   +  r ++                          + +++++  +   
   mKIAA0483   345 PRKRRKAT-------------------------EAIDSLRKSK    362  

//