hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj10183/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA0482  ( 1331 res)   mfj10183

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PAS      PAS domain                                      42.3    6.3e-08   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PAS        1/2     248   315 ..     1    68 []    12.2      7.6
PAS        2/2     388   454 ..     1    68 []    30.1  0.00031

Alignments of top-scoring domains:
PAS: domain 1 of 2, from 248 to 315: score 12.2, E = 7.6
                   *->erlraileslpdgiivld.ldGrilyaNpaaeellGyspeeliGksl
                         +  l + +++ ++++ l+Gri+y+++ a  ll   ++   G  +
   mKIAA0482   248    ITSEYTLRNQDTFSVAVSfLTGRIVYISEQAGVLLRCKRDVFRGARF 294  

                   lelihpedrlleevqe.lqrlla<-*
                   +el+ p+d     +  +  +++    
   mKIAA0482   295 SELLAPQDV--GVFYGsTTPSRL    315  

PAS: domain 2 of 2, from 388 to 454: score 30.1, E = 0.00031
                   *->erlraileslpdgiivldldGrilyaNpaaeellGyspeeliGksll
                       +  +i      +  ++++   + +++++a+ llGy p++l+G ++l
   mKIAA0482   388    YEAPRIPPDKRIFTTRHTPSCLFQDVDERAAPLLGYLPQDLLGAPVL 434  

                   elihpedrlleevqe.lqrlla<-*
                    ++hpedr  + +++ +++ l+   
   mKIAA0482   435 LFLHPEDR--PLMLAiHKKILQ    454  

//